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[181377_at]

Description Y40H7A.1 /REP_DB=WormBase Gene ID /WP=CE21812 /TR=Q9XWA2 /GB=CAA22064.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 03      6grp_cgc > 41      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 56.6
(-3)
A 		66.7
(-1.8)
A 		68.4
(-1.7)
A 		109.2
(3)
A 		53
B 68.6
(2.9)
A 		52.8
(-0.6)
A 		42.3
(-3)
A 		69.1
(3)
A 		27
C 82.6
(-1.6)
A 		71.1
(-2.3)
A 		58.6
(-3)
A 		161.2
(3)
P 		103
avr 69.3
(-1.6) 		63.5
(-2.3) 		56.4
(-3) 		113.2
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 108.9
(3)
A 		52.8
(-1.2)
A 		64
(-0.4)
A 		43.8
(-1.9)
A 		41.9
(-2)
A 		28.5
(-3)
A 		80
B 41.2
(-2.1)
A 		78.9
(3)
A 		34.6
(-3)
A 		74.3
(2.4)
A 		59
(0.3)
A 		39.3
(-2.4)
A 		44
C 36.3
(-1.6)
A 		100.3
(3)
A 		34.5
(-1.8)
A 		28.1
(-2.2)
A 		17.3
(-3)
A 		18.5
(-2.9)
A 		83
avr 62.1
(1.1) 		77.3
(3) 		44.4
(-1.1) 		48.7
(-0.5) 		39.4
(-1.7) 		28.8
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 20.6
(3)
A 		14.5
(-3)
A 		17.9
(0.3)
A 		16
(-1.5)
A 		6
B 21.9
(3)
A 		13
(-1.4)
A 		9.8
(-3)
A 		14.7
(-0.6)
A 		12
C 27.3
(3)
A 		20.4
(-3)
A 		20.4
(-3)
A 		27.2
(2.9)
P 		7
avr 23.3
(3) 		16
(-3) 		16
(-3) 		19.3
(-0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 20.1
(3)
A 		18.8
(2.4)
A 		13.9
(0.2)
A 		11.1
(-1.1)
A 		12.6
(-0.4)
A 		6.9
(-3)
A 		13
B 14.3
(-1)
A 		26.3
(3)
A 		8.4
(-3)
A 		19.7
(0.8)
A 		24
(2.2)
A 		14.7
(-0.9)
A 		18
C 13.5
(-1.1)
A 		30.6
(3)
A 		8.8
(-2.2)
A 		5.6
(-3)
A 		5.6
(-3)
A 		6.2
(-2.9)
A 		25
avr 16
(-0.5) 		25.2
(3) 		10.4
(-2.6) 		12.1
(-1.9) 		14.1
(-1.2) 		9.3
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181377_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9496
Sequence Type Exemplar sequence
Representative Public ID Y40H7A.1 NCBI
Target Description Y40H7A.1 /REP_DB=WormBase Gene ID /WP=CE21812 /TR=Q9XWA2 /GB=CAA22064.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070427(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070427 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-78) (str-78) mRNA, complete cds. 9/11 None
Y40H7A.1 ENSEMBL cdna:known chromosome:CEL140:IV:15143735:15147166:-1 gene:Y40H7A.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15143740-15147172(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-78
Ensembl Y40H7A.1
Entrez Gene 189800 Entrez gene
SwissProt Q9XWA2 EMBL-EBI
WormBase CE36235 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22064 Hypothetical protein Y40H7A.1 [Caenorhabditis elegans] ref|NP_502828.2| Seven TM Receptor family member (str-78) [Caenorhabditis elegans] 1.0E-160
blast CAE68101 Hypothetical protein CBG13741 [Caenorhabditis briggsae] 1.0E-119
blast CAE68100 Hypothetical protein CBG13740 [Caenorhabditis briggsae] 2.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.4E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502828.2 7 15-37,49-71,99-121,140-162,214-236,257-279,294-316
Y40H7A.1 7 15-37,49-71,99-121,140-162,214-236,257-279,294-316
Sequence
Target Sequence 
>C. ELEGANS:181377_AT
gttgctgcaagttacgccgttgaaaacgaattgggaatacggtcactcaattggccaacc
atttttatggttatcaattttgcactgatcatggtaagacttactctagcagccgacatt
ttatggggacattttttgaaaacatttcgtaaaacgcacgcgtatttgatacaaactggt
ctctcgttctccgtgattcttctatgcctatactttatccatcacaaaatgaaaggtgtc
acctattcaaaagtctacgaagccgtccaaaaacaactctacagagctctgttatcccaa
atgattgttcctttgattctcatctacatacccattctaatagtaatgattcttccaatt
tttaatgtaaaaaatgatgcttccactagtttaacctccattttaatttccatctaccca
gtgctagacccttttgctgtgataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCTGCAAGTTACGCCGTTGAAA 24 441 580 Antisense
GGAATACGGTCACTCAATTGGCCAA 535 533 613 Antisense
AAGACTTACTCTAGCAGCCGACATT 379 151 675 Antisense
TGATACAAACTGGTCTCTCGTTCTC 419 565 746 Antisense
GTGATTCTTCTATGCCTATACTTTA 22 485 772 Antisense
GAAGCCGTCCAAAAACAACTCTACA 26 345 838 Antisense
ACAGAGCTCTGTTATCCCAAATGAT 126 109 860 Antisense
TCTCATCTACATACCCATTCTAATA 328 613 897 Antisense
TGATGCTTCCACTAGTTTAACCTCC 34 567 954 Antisense
TCCATTTTAATTTCCATCTACCCAG 644 585 976 Antisense
TGCTAGACCCTTTTGCTGTGATAAT 1 581 1001 Antisense
Sequence Source Affymetrix Proprietary Database