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[181376_at]

Description F55C7.2 /REP_DB=WormBase Gene ID /WP=CE11170 /TR=P91335 /GB=AAC71107.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 6.3
(-2.9)
A 		11
(-2)
A 		5.8
(-3)
A 		37.2
(3)
A 		31
B 11.1
(-0.1)
A 		15.4
(3)
A 		10.3
(-0.7)
A 		7.2
(-3)
A 		8
C 7
(-2.6)
A 		6.5
(-2.7)
A 		4.9
(-3)
A 		39.5
(3)
A 		35
avr 8.1
(-2.7) 		11
(-1.9) 		7
(-3) 		28
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 19.9
(3)
A 		9.6
(-0.6)
A 		2.7
(-3)
A 		4.1
(-2.5)
A 		8.2
(-1.1)
A 		8.1
(-1.1)
A 		17
B 20
(3)
A 		6.8
(-2.4)
A 		5.2
(-3)
A 		6.4
(-2.5)
A 		12.2
(-0.2)
A 		6.8
(-2.4)
A 		15
C 6.7
(-2.9)
A 		36.4
(3)
A 		8.5
(-2.6)
A 		6.4
(-3)
A 		23.4
(0.4)
A 		11.1
(-2.1)
A 		30
avr 15.5
(2) 		17.6
(3) 		5.5
(-3) 		5.6
(-3) 		14.6
(1.5) 		8.7
(-1.4) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.3
(-1.8)
A 		2.4
(-1.6)
A 		1.5
(-3)
A 		5.4
(3)
A 		4
B 3.5
(2.2)
A 		3.8
(3)
A 		2.4
(-0.7)
A 		1.5
(-3)
A 		2
C 2.3
(-2.3)
A 		1.9
(-2.8)
A 		1.7
(-3)
A 		6.7
(3)
A 		5
avr 2.7
(-1.2) 		2.7
(-1.2) 		1.9
(-3) 		4.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.7
(3)
A 		3.4
(2.4)
A 		0.6
(-3)
A 		1.1
(-2)
A 		2.5
(0.7)
A 		2
(-0.3)
A 		3
B 7
(3)
A 		2.3
(-1.9)
A 		1.3
(-3)
A 		1.7
(-2.6)
A 		4.9
(0.8)
A 		2.5
(-1.7)
A 		6
C 2.5
(-2.3)
A 		11.1
(3)
A 		2.2
(-2.4)
A 		1.3
(-3)
A 		7.6
(0.9)
A 		3.7
(-1.5)
A 		10
avr 4.4
(1.3) 		5.6
(3) 		1.4
(-3) 		1.4
(-3) 		5
(2.1) 		2.7
(-1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181376_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.227
Sequence Type Exemplar sequence
Representative Public ID F55C7.2 NCBI
Target Description F55C7.2 /REP_DB=WormBase Gene ID /WP=CE11170 /TR=P91335 /GB=AAC71107.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058887(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058887 NCBI Caenorhabditis elegans F55C7.2 (F55C7.2) mRNA, complete cds. 11/11 None
F55C7.2 ENSEMBL cdna:known chromosome:CEL140:I:4005437:4006021:1 gene:F55C7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4005436-4006021(+) 92.88 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C7.2
Entrez Gene 186288 Entrez gene
SwissProt P91335 EMBL-EBI
WormBase CE11170 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71107 Hypothetical protein F55C7.2 [Caenorhabditis elegans] ref|NP_491288.1| F55C7.2 [Caenorhabditis elegans] 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:181376_AT
gggggaagagacacggagacaggagagaaggatcgatgcggagaagcgcgcggtttcctc
tcttcttttccgcatcattcgcagccactccacaccagtagccaacagcacagcgagcga
tgaagccaccgctgccgccgccgcagggcaacaaaactttgcaagtagaaaaagaagaga
gacaaagaagagagagaagtcgtcgtcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGGAAGAGACACGGAGACAGGAG 221 483 15 Antisense
GGAGACAGGAGAGAAGGATCGATGC 43 519 29 Antisense
GGATCGATGCGGAGAAGCGCGCGGT 156 513 44 Antisense
TCGATGCGGAGAAGCGCGCGGTTTC 171 601 47 Antisense
CACCAGTAGCCAACAGCACAGCGAG 217 199 107 Antisense
AGTAGCCAACAGCACAGCGAGCGAT 122 61 111 Antisense
CAGCACAGCGAGCGATGAAGCCACC 206 205 120 Antisense
CAGCGAGCGATGAAGCCACCGCTGC 531 203 125 Antisense
CGCCGCCGCAGGGCAACAAAACTTT 93 257 150 Antisense
GCCGCAGGGCAACAAAACTTTGCAA 422 269 154 Antisense
AAGAAGAGAGAGAAGTCGTCGTCGT 210 151 199 Antisense
Sequence Source Affymetrix Proprietary Database