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[181374_at]

Description B0507.4 /REP_DB=WormBase Gene ID /WP=CE07763 /TR=Q22880 /GB=AAB04816.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 18      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 2.2
(-3)
A 		19.9
(-1.2)
A 		2.9
(-2.9)
A 		61.1
(3)
A 		59
B 34.7
(3)
A 		20.7
(-2.6)
A 		19.8
(-3)
A 		26.8
(-0.2)
P 		15
C 7.3
(-3)
A 		31.3
(-1)
A 		16.1
(-2.3)
A 		78.2
(3)
A 		71
avr 14.7
(-2.7) 		24
(-1.4) 		12.9
(-3) 		55.4
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 35.9
(3)
A 		27.4
(1.5)
A 		13.5
(-1)
A 		2.2
(-3)
A 		9.1
(-1.8)
A 		14.6
(-0.8)
A 		34
B 14.8
(-0.8)
A 		2.5
(-2.8)
A 		38
(3)
A 		1.4
(-3)
A 		7.7
(-2)
A 		5.1
(-2.4)
A 		37
C 19.4
(2.3)
A 		21.6
(3)
A 		2.3
(-3)
A 		4.4
(-2.3)
A 		9.2
(-0.9)
A 		8.5
(-1.1)
A 		19
avr 23.4
(3) 		17.2
(1.2) 		17.9
(1.4) 		2.7
(-3) 		8.7
(-1.3) 		9.4
(-1.1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.8
(-3)
A 		4.3
(-0.4)
A 		0.8
(-3)
A 		8.9
(3)
A 		8
B 11.1
(3)
A 		5.1
(-2.5)
A 		4.6
(-3)
A 		5.7
(-2)
P 		7
C 2.4
(-3)
A 		9
(0.7)
A 		5.6
(-1.2)
A 		13.2
(3)
A 		11
avr 4.8
(-1.8) 		6.1
(-0.4) 		3.7
(-3) 		9.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6.6
(0.9)
A 		9.8
(3)
A 		2.9
(-1.5)
A 		0.6
(-3)
A 		2.8
(-1.6)
A 		3.6
(-1)
A 		9
B 5.2
(0.3)
A 		0.8
(-2.7)
A 		9.2
(3)
A 		0.4
(-3)
A 		3.1
(-1.2)
A 		1.9
(-2)
A 		9
C 7.2
(3)
A 		6.6
(2.5)
A 		0.6
(-3)
A 		0.9
(-2.7)
A 		3
(-0.8)
A 		2.8
(-1)
A 		7
avr 6.3
(3) 		5.7
(2.4) 		4.2
(0.8) 		0.6
(-3) 		3
(-0.5) 		2.8
(-0.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11479
Sequence Type Exemplar sequence
Representative Public ID B0507.4 NCBI
Target Description B0507.4 /REP_DB=WormBase Gene ID /WP=CE07763 /TR=Q22880 /GB=AAB04816.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072854(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072854 NCBI Caenorhabditis elegans B0507.4 (B0507.4) mRNA, complete cds. 11/11 None
B0507.4 ENSEMBL cdna:known chromosome:CEL140:V:8757558:8758347:1 gene:B0507.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000006066 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8757558-8758348(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0507.4
Entrez Gene 182011 Entrez gene
SwissProt Q22880 EMBL-EBI
WormBase CE35211 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04816 Hypothetical protein B0507.4 [Caenorhabditis elegans] ref|NP_505255.2| B0507.4 [Caenorhabditis elegans] 3.0E-97
blast AAB52292 Hypothetical protein ZC196.3 [Caenorhabditis elegans] ref|NP_505250.1| ZC196.3 [Caenorhabditis elegans] 1.0E-28
blast CAE71571 Hypothetical protein CBG18522 [Caenorhabditis briggsae] 7.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 2.2E-99
Sequence
Target Sequence 
>C. ELEGANS:181374_AT
gactccacaaattgaaacttgcggcatttttcgattgcattcggttgaaatatcgatttg
aagaaaaagcacacgaatggtccgattggattgaaaaccatcttagacaaatgattatta
gagcaaaaaatttcaaatatttcaaatcagtttcggaagaaatgatgcctgaaataaatt
ctgaaatatttaatctaaatgaagaaatcacgatcttgctcaacaatttttctaccattt
tcaacaactttgaaattatgtatatcgaccatccagaaggactttttattcgcgttattc
aaaaaagcttgtgcatgatagctgtaaaactcctggaaatccggaattctttagacaaag
ctgacatgtcaaatgactggtatgaagagacaagggcgcttttctcaaacatcaaaataa
gtgacattccaacggtttcccaattgagaaaaatttgtaaaaatgagagtcattctgact
acgaagaattgaaatttccggaggttttgagagtagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCCACAAATTGAAACTTGCGGC 322 371 44 Antisense
GCGGCATTTTTCGATTGCATTCGGT 420 293 64 Antisense
AGCACACGAATGGTCCGATTGGATT 351 77 111 Antisense
GAAATCACGATCTTGCTCAACAATT 308 363 247 Antisense
TGTATATCGACCATCCAGAAGGACT 681 559 302 Antisense
CAGAAGGACTTTTTATTCGCGTTAT 315 205 317 Antisense
GCATGATAGCTGTAAAACTCCTGGA 339 311 356 Antisense
TCCTGGAAATCCGGAATTCTTTAGA 202 595 374 Antisense
AGACAAGGGCGCTTTTCTCAAACAT 136 73 431 Antisense
TAAGTGACATTCCAACGGTTTCCCA 496 637 461 Antisense
ATTTCCGGAGGTTTTGAGAGTAGCT 225 13 537 Antisense
Sequence Source Affymetrix Proprietary Database