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[181373_at]

Description F52C6.2 /REP_DB=WormBase Gene ID /WP=CE10806 /TR=O44821 /GB=AAB94971.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_highest_8_8 > 13      4grp_high_8_8 > 22      6grp_total > 97      4grp_total > 16      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 80.6
(-3)
P 		165
(0.3)
P 		204.1
(1.8)
P 		233.6
(3)
P 		153
B 81.7
(-3)
P 		114.6
(-1.4)
P 		121.5
(-1.1)
P 		206.8
(3)
P 		125
C 98
(-3)
P 		151.7
(-1.2)
P 		132.8
(-1.8)
P 		274
(3)
P 		176
avr 86.8
(-3) 		143.8
(-0.7) 		152.8
(-0.4) 		238.1
(3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 581
1 2 3 4 5 6 range
A 128.8
(-3)
P 		126.5
(-3)
P 		141.1
(-2.8)
P 		265.6
(-1.1)
P 		465
(1.7)
P 		563.1
(3)
P 		437
B 88.9
(-2.9)
P 		81.6
(-3)
A 		110.5
(-2.7)
P 		204.5
(-1.7)
P 		475.6
(1.1)
P 		658.4
(3)
P 		577
C 112.2
(-3)
P 		123.4
(-2.9)
P 		135.5
(-2.7)
P 		203.7
(-2)
P 		475.5
(1)
P 		662.6
(3)
P 		550
avr 110
(-3) 		110.5
(-3) 		129
(-2.8) 		224.6
(-1.7) 		472
(1.2) 		628
(3) 		518
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 29.3
(-3)
P 		35.8
(-1.4)
P 		53.3
(3)
P 		34.2
(-1.8)
P 		24
B 26.1
(-3)
P 		28.3
(-2.3)
P 		28.2
(-2.3)
P 		44.1
(3)
P 		18
C 32.4
(-3)
P 		43.6
(1.8)
P 		46.3
(3)
P 		46.2
(3)
P 		14
avr 29.3
(-3) 		35.9
(-0) 		42.6
(3) 		41.5
(2.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 23.7
(-3)
P 		45
(-1.9)
P 		30.7
(-2.6)
P 		67.4
(-0.8)
P 		140.3
(3)
P 		137.1
(2.8)
P 		117
B 30.9
(-2.9)
P 		27.2
(-3)
A 		26.8
(-3)
P 		54.2
(-2.2)
P 		193.2
(1.6)
P 		245.5
(3)
P 		219
C 41.6
(-2.8)
P 		37.7
(-2.9)
P 		34.5
(-3)
P 		41
(-2.8)
P 		153.9
(0.8)
P 		221.8
(3)
P 		187
avr 32.1
(-3) 		36.6
(-2.8) 		30.7
(-3) 		54.2
(-2.2) 		162.5
(1.6) 		201.5
(3) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181373_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4829
Sequence Type Exemplar sequence
Representative Public ID F52C6.2 NCBI
Target Description F52C6.2 /REP_DB=WormBase Gene ID /WP=CE10806 /TR=O44821 /GB=AAB94971.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061727(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061727 NCBI Caenorhabditis elegans F52C6.2 (F52C6.2) mRNA, complete cds. 9/11 None
SNAP00000005726 ENSEMBL cdna:SNAP chromosome:CEL140:II:1926472:1927263:1 9/11 None
GENEFINDER00000005739 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1926472:1927480:1 11/11 None
F52C6.2.1 ENSEMBL cdna:known chromosome:CEL140:II:1926472:1927249:1 gene:F52C6.2 9/11 None
F52C6.2.4 ENSEMBL cdna:known chromosome:CEL140:II:1926472:1927238:1 gene:F52C6.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F52C6.2.2 6/11 Cross Hyb Matching Probes None
F52C6.2.3 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1926470-1927249(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52C6.2
Entrez Gene 173558 Entrez gene
SwissProt O44821 EMBL-EBI
WormBase CE32669 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94971 Hypothetical protein F52C6.2 [Caenorhabditis elegans] ref|NP_494128.2| F52C6.2 [Caenorhabditis elegans] 2.0E-55
blast AAB94971 Hypothetical protein F52C6.2 [Caenorhabditis elegans] ref|NP_494128.2| F52C6.2 [Caenorhabditis elegans] 2.0E-54
blast AAB94971 Hypothetical protein F52C6.2 [Caenorhabditis elegans] ref|NP_494128.2| F52C6.2 [Caenorhabditis elegans] 8.0E-54
blast AAB94972 Hypothetical protein F52C6.3 [Caenorhabditis elegans] ref|NP_494127.2| F52C6.3 [Caenorhabditis elegans] 4.0E-38
blast AAB94972 Hypothetical protein F52C6.3 [Caenorhabditis elegans] ref|NP_494127.2| F52C6.3 [Caenorhabditis elegans] 1.0E-32
blast AAB94972 Hypothetical protein F52C6.3 [Caenorhabditis elegans] ref|NP_494127.2| F52C6.3 [Caenorhabditis elegans] 4.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 1.2E-22
Sequence
Target Sequence 
>C. ELEGANS:181373_AT
tcgtttttgcagtctcttacgacaaagatgccggaaatcaaatcattgaaatggaggaca
ctgtccaagatgtcaaaattcaagaggctcagcaagcaccgcttcgtgaatcagaagaag
tgaccggagatcccatcaaagtcgaagcatcggacaccaacagaaatgaagaaaaccccg
atttggctgggccacccgcggagccagttattcgtggcactgccgctccggtagaattta
gcatcgccctatcagattcggcgggtttcagtcgatggaaatttcaacgtttttgtgaaa
aactcaaccggaggaaagactaccgctgtttcaatcaagaatacggatacaattggtacc
ttgaagctcaaggttcaggagaaggaaggcattccaccaaatcagcagcgtcttctcttc
aagggatcggagcttatggattatcgtactgtggcgcattgtggact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTTTTTGCAGTCTCTTACGACAA 184 605 104 Antisense
GTGACCGGAGATCCCATCAAAGTCG 24 481 223 Antisense
AAGTCGAAGCATCGGACACCAACAG 216 157 242 Antisense
GGAGCCAGTTATTCGTGGCACTGCC 64 521 303 Antisense
GCACTGCCGCTCCGGTAGAATTTAG 507 313 320 Antisense
TTAGCATCGCCCTATCAGATTCGGC 135 665 341 Antisense
GATTCGGCGGGTTTCAGTCGATGGA 698 431 358 Antisense
AAGACTACCGCTGTTTCAATCAAGA 80 153 419 Antisense
TCCACCAAATCAGCAGCGTCTTCTC 557 589 496 Antisense
GCGTCTTCTCTTCAAGGGATCGGAG 162 289 511 Antisense
ATCGTACTGTGGCGCATTGTGGACT 468 35 546 Antisense
Sequence Source Affymetrix Proprietary Database