[Home] | [Total List]

[181372_at] 7TM chemoreceptor, srw family

Description Y38H6C.2 /REP_DB=WormBase Gene ID /WP=CE19096 /TR=Q9XX39 /GB=CAA21000.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 28      6grp_cgc > 96      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 32.4
(-3)
A 		57.8
(3)
A 		43.6
(-0.4)
A 		46.4
(0.3)
A 		25
B 18.1
(-1.8)
A 		45.2
(2.1)
A 		9.7
(-3)
A 		51.4
(3)
A 		42
C 63.2
(3)
A 		42.1
(0.8)
A 		6
(-3)
A 		55.3
(2.2)
A 		57
avr 37.9
(0.5) 		48.4
(2.5) 		19.8
(-3) 		51
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 28.4
(-0.3)
A 		7.7
(-3)
A 		43.6
(1.8)
A 		53
(3)
A 		47.2
(2.2)
A 		26.4
(-0.5)
A 		45
B 30.9
(0.7)
A 		21.2
(-0.8)
A 		6.7
(-3)
A 		45.6
(3)
A 		23.6
(-0.4)
A 		23.6
(-0.4)
A 		39
C 18.4
(-2.1)
A 		33.2
(-0.8)
A 		8.5
(-3)
A 		74.9
(3)
A 		19.8
(-2)
A 		46.4
(0.4)
A 		66
avr 25.9
(-2) 		20.7
(-2.8) 		19.6
(-3) 		57.8
(3) 		30.2
(-1.3) 		32.1
(-1) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 11.8
(2.3)
A 		12.5
(3)
A 		11.4
(1.8)
A 		6.8
(-3)
A 		6
B 5.8
(-0.6)
A 		11.2
(3)
A 		2.2
(-3)
A 		10.9
(2.8)
A 		9
C 20.9
(3)
A 		12.1
(0.2)
A 		2.1
(-3)
A 		9.3
(-0.7)
A 		19
avr 12.8
(3) 		11.9
(2.3) 		5.2
(-3) 		9
(-0) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.2
(-1.7)
A 		2.8
(-3)
A 		9.5
(0.5)
A 		13.4
(2.6)
A 		14.2
(3)
A 		6.4
(-1.1)
A 		11
B 10.8
(2.3)
A 		7.1
(0.1)
A 		1.6
(-3)
A 		12.1
(3)
A 		9.6
(1.6)
A 		8.8
(1.1)
A 		11
C 6.8
(-0.9)
A 		10.1
(0.6)
A 		2.2
(-3)
A 		15.1
(2.8)
A 		6.4
(-1.1)
A 		15.5
(3)
A 		13
avr 7.6
(-0.9) 		6.7
(-1.5) 		4.4
(-3) 		13.5
(3) 		10.1
(0.8) 		10.2
(0.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14622
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.2 NCBI
Target Description Y38H6C.2 /REP_DB=WormBase Gene ID /WP=CE19096 /TR=Q9XX39 /GB=CAA21000.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075545(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075545 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-65) (srw-65) mRNA, complete cds. 11/11 None
SNAP00000041314 ENSEMBL cdna:SNAP chromosome:CEL140:V:20498863:20500078:-1 9/11 None
Y38H6C.2 ENSEMBL cdna:known chromosome:CEL140:V:20498863:20501279:-1 gene:Y38H6C.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041356 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20498862-20501279(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-65
Ensembl Y38H6C.2
Entrez Gene 189683 Entrez gene
SwissProt Q9XX39 EMBL-EBI
WormBase CE19096 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21000 Hypothetical protein Y38H6C.2 [Caenorhabditis elegans] ref|NP_507946.1| Serpentine Receptor, class W family member (srw-65) [Caenorhabditis elegans] 1.0E-154
blast CAA21000 Hypothetical protein Y38H6C.2 [Caenorhabditis elegans] ref|NP_507946.1| Serpentine Receptor, class W family member (srw-65) [Caenorhabditis elegans] 2.0E-79
blast AAC26295 Serpentine receptor, class w protein 66 [Caenorhabditis elegans] ref|NP_493936.2| Serpentine Receptor, class W family member (srw-66) [Caenorhabditis elegans] 1.0E-56
blast NP_504905 Serpentine Receptor, class W family member (srw-69) [Caenorhabditis elegans] gb|AAK18937.1| Serpentine receptor, class w protein 69 [Caenorhabditis elegans] 2.0E-51
blast NP_504905 Serpentine Receptor, class W family member (srw-69) [Caenorhabditis elegans] gb|AAK18937.1| Serpentine receptor, class w protein 69 [Caenorhabditis elegans] 2.0E-21
blast AAC26295 Serpentine receptor, class w protein 66 [Caenorhabditis elegans] ref|NP_493936.2| Serpentine Receptor, class W family member (srw-66) [Caenorhabditis elegans] 9.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507946.1 6 7-29,63-82,94-116,165-187,210-232,247-269
Y38H6C.2 6 7-29,63-82,94-116,165-187,210-232,247-269
SNAP00000041314 3 20-42,63-85,105-127
Sequence
Target Sequence 
>C. ELEGANS:181372_AT
gagtacactactaacgttttcttattttttcagctttgagttttttgaagaaacgtgggt
actgccgaaaaagtgcaccggtttcccgaaaaacttcaccgcaacccaatacatttcaac
gatgactgacgcgtaccaaggtggaaaagaatctaaaaaatatacaatttactatatcat
tgatggttccataaaggcttgcctcgcaattcttcttcccatcctcacagctctactagt
tggacagctgagaaaaatgatcgctctgcggaaaaaaacgtcttcgttgagaaatgataa
tggaaggcagcttgtaattctgatggcaatttcatttatcactgctgaattgccaattgg
gattctttatatctccacagggttgctcgctagtcatccggcaattgtaactaccatacg
ctatttgatggatattttcacgtcatttgttgccattaacgccaccgttcatttcttaat
ttgcctcggcgtaaacgctcattatcgagacactgttaaagagctattccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTACACTACTAACGTTTTCTTAT 648 399 330 Antisense
CCGCAACCCAATACATTTCAACGAT 531 263 428 Antisense
ATGACTGACGCGTACCAAGGTGGAA 206 43 451 Antisense
TAAAGGCTTGCCTCGCAATTCTTCT 25 641 521 Antisense
CCATCCTCACAGCTCTACTAGTTGG 607 271 548 Antisense
TTTATATCTCCACAGGGTTGCTCGC 301 673 695 Antisense
CTCGCTAGTCATCCGGCAATTGTAA 630 231 715 Antisense
GTCATTTGTTGCCATTAACGCCACC 137 467 771 Antisense
TAACGCCACCGTTCATTTCTTAATT 674 635 786 Antisense
TAATTTGCCTCGGCGTAAACGCTCA 222 633 806 Antisense
GACACTGTTAAAGAGCTATTCCGCT 397 367 838 Antisense
Sequence Source Affymetrix Proprietary Database