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[181371_at] 7TM receptor, sre family

Description C47A10.4 /REP_DB=WormBase Gene ID /WP=CE15717 /TR=O45306 /GB=CAB03969.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 19      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 12.4
(-3)
A 		34.3
(-0.6)
A 		13
(-2.9)
A 		66.3
(3)
A 		54
B 10.8
(-1.8)
A 		31.1
(3)
A 		5.9
(-3)
A 		23.9
(1.3)
A 		25
C 10.3
(-2.5)
A 		6.9
(-2.9)
A 		6.2
(-3)
A 		58.3
(3)
A 		52
avr 11.2
(-2.6) 		24.1
(-0.7) 		8.4
(-3) 		49.5
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 9.8
(-0.8)
A 		7.1
(-1.6)
A 		4.8
(-2.2)
A 		22.8
(3)
A 		2.2
(-3)
A 		8.4
(-1.2)
A 		21
B 40.3
(3)
A 		7.7
(-2.6)
A 		27.8
(0.9)
A 		19.1
(-0.6)
A 		5.4
(-3)
A 		6.3
(-2.8)
A 		35
C 6.6
(-2.8)
A 		17
(-1.7)
A 		8.5
(-2.6)
A 		62.6
(3)
A 		4.6
(-3)
A 		18.6
(-1.6)
A 		58
avr 18.9
(-0.1) 		10.6
(-1.7) 		13.7
(-1.1) 		34.8
(3) 		4.1
(-3) 		11.1
(-1.6) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.5
(-2)
A 		7.5
(0.9)
A 		3.4
(-3)
A 		9.7
(3)
A 		6
B 3.5
(-1)
A 		7.7
(3)
A 		1.4
(-3)
A 		5.1
(0.5)
A 		6
C 3.4
(-1.9)
A 		2
(-3)
A 		2.1
(-2.9)
A 		9.8
(3)
A 		8
avr 3.8
(-1.5) 		5.7
(0.5) 		2.3
(-3) 		8.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.8
(-1.7)
A 		2.5
(-0.9)
A 		1
(-2.6)
A 		5.8
(3)
A 		0.7
(-3)
A 		2
(-1.5)
A 		5
B 14
(3)
A 		2.6
(-2.8)
A 		6.8
(-0.7)
A 		5.1
(-1.5)
A 		2.2
(-3)
A 		2.4
(-2.9)
A 		12
C 2.5
(-2.5)
A 		5.2
(-1)
A 		2.2
(-2.6)
A 		12.6
(3)
A 		1.5
(-3)
A 		6.2
(-0.5)
A 		11
avr 6.1
(1.4) 		3.4
(-1.2) 		3.3
(-1.3) 		7.8
(3) 		1.5
(-3) 		3.5
(-1.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181371_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12565
Sequence Type Exemplar sequence
Representative Public ID C47A10.4 NCBI
Target Description C47A10.4 /REP_DB=WormBase Gene ID /WP=CE15717 /TR=O45306 /GB=CAB03969.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075089(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075089 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-21) (sre-21) mRNA, complete cds. 11/11 None
GENEFINDER00000022125 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17772229:17775784:-1 11/11 None
C47A10.4 ENSEMBL cdna:known chromosome:CEL140:V:17772229:17775784:-1 gene:C47A10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022110 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17773929-17775784(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-21
Ensembl C47A10.4
Entrez Gene 183529 Entrez gene
SwissProt O45306 EMBL-EBI
WormBase CE38053 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03969 Hypothetical protein C47A10.4 [Caenorhabditis elegans] ref|NP_507490.2| Serpentine Receptor, class E (epsilon) family member (sre-21) [Caenorhabditis elegans] sp|O45306|SRE21_CAEEL Serpentine receptor class epsilon-21 (Protein sre-21) 0.0
blast CAE61728 Hypothetical protein CBG05679 [Caenorhabditis briggsae] 5.0E-84
blast CAB03517 Hypothetical protein ZK265.5 [Caenorhabditis elegans] ref|NP_492247.2| Serpentine Receptor, class E (epsilon) family member (sre-23) [Caenorhabditis elegans] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 3.1E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507490.2 7 48-70,83-105,115-137,158-178,188-210,250-272,292-314
C47A10.4 7 48-70,83-105,115-137,158-178,188-210,250-272,292-314
GENEFINDER00000022125 7 48-70,83-105,115-137,158-178,188-210,250-272,292-314
Sequence
Target Sequence 
>C. ELEGANS:181371_AT
gttgtcagtcggtcttttgtgtttatttttcagtggtcctcagacggcttgcagtcgagg
tcaggattattgttttgggccgcccttctcagatatcattatatgttttttggtgttcac
acattgctttgtattacagcggagcgggcaatggctacgattttgctaaaagactacgag
acccgacctcgagtatggatcgcggcgattctcattggagcgaactttcttatctcgttg
acctacgcatttttagcggtttttcagcaaattttgatgaaatccatatttatcgtgtgt
ctcgccgtggctgttgtatccataattttactggaaattatttattttctgaatcgaaag
cgtctcgattctctgataagacatgataatacaatggtcctttatacgctgagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTCAGTCGGTCTTTTGTGTTTA 28 437 292 Antisense
GTTTATTTTTCAGTGGTCCTCAGAC 55 449 312 Antisense
CAGACGGCTTGCAGTCGAGGTCAGG 402 203 332 Antisense
TCAGGATTATTGTTTTGGGCCGCCC 116 607 352 Antisense
AGACCCGACCTCGAGTATGGATCGC 492 69 470 Antisense
TGGATCGCGGCGATTCTCATTGGAG 58 551 487 Antisense
TGGAGCGAACTTTCTTATCTCGTTG 385 549 507 Antisense
CCATATTTATCGTGTGTCTCGCCGT 341 269 575 Antisense
TCGCCGTGGCTGTTGTATCCATAAT 430 599 593 Antisense
GAAAGCGTCTCGATTCTCTGATAAG 522 359 647 Antisense
ACAATGGTCCTTTATACGCTGAGCA 307 113 682 Antisense
Sequence Source Affymetrix Proprietary Database