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[181370_s_at]

Description K09F6.6 /REP_DB=WormBase Gene ID /WP=CE12034 /TR=O16732 /GB=AAB66196.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 03      6grp_total > 46      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 72.2
(-1)
P 		37.7
(-3)
P 		48.8
(-2.3)
P 		139.7
(3)
A 		102
B 60.4
(0.2)
P 		35.3
(-3)
A 		64
(0.7)
A 		82.3
(3)
P 		47
C 78.5
(-0.6)
P 		40
(-3)
A 		53.4
(-2.2)
A 		136.1
(3)
P 		96
avr 70.4
(-0.6) 		37.7
(-3) 		55.4
(-1.7) 		119.4
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 89.2
(-0.1)
P 		125.8
(3)
P 		54.4
(-3)
P 		55.8
(-2.9)
A 		76.2
(-1.2)
A 		121.2
(2.6)
P 		71
B 94.1
(2.6)
A 		98.1
(3)
P 		38.6
(-3)
P 		78
(1)
P 		82
(1.4)
A 		81.3
(1.3)
P 		60
C 53.6
(-1.5)
P 		111.5
(3)
P 		100.5
(2.1)
P 		74.9
(0.1)
M 		35.1
(-3)
A 		75.7
(0.2)
P 		76
avr 79
(-1.2) 		111.8
(3) 		64.5
(-3) 		69.6
(-2.3) 		64.4
(-3) 		92.7
(0.6) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 26.3
(3)
P 		8.2
(-3)
P 		12.8
(-1.5)
P 		20.5
(1.1)
A 		18
B 19.3
(3)
P 		8.7
(-3)
A 		14.8
(0.5)
A 		17.5
(2)
P 		11
C 26
(3)
P 		11.5
(-3)
A 		18.6
(-0.1)
A 		22.9
(1.7)
P 		15
avr 23.9
(3) 		9.5
(-3) 		15.4
(-0.5) 		20.3
(1.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 16.4
(-2.2)
P 		44.7
(3)
P 		11.8
(-3)
P 		14.2
(-2.6)
A 		23
(-1)
A 		29.5
(0.2)
P 		33
B 32.8
(2.9)
A 		32.6
(2.8)
P 		9.4
(-3)
P 		20.7
(-0.2)
P 		33.3
(3)
A 		30.3
(2.2)
P 		24
C 19.9
(-0.7)
P 		34
(3)
P 		25.6
(0.8)
P 		15.1
(-2)
M 		11.4
(-3)
A 		25.3
(0.7)
P 		23
avr 23
(-0.9) 		37.1
(3) 		15.6
(-3) 		16.7
(-2.7) 		22.6
(-1) 		28.4
(0.6) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181370_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5917
Sequence Type Exemplar sequence
Representative Public ID K09F6.6 NCBI
Target Description K09F6.6 /REP_DB=WormBase Gene ID /WP=CE12034 /TR=O16732 /GB=AAB66196.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061824(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061824 NCBI Caenorhabditis elegans K09F6.6 (K09F6.6) mRNA, complete cds. 11/11 None
SNAP00000009220 ENSEMBL cdna:SNAP chromosome:CEL140:II:2274919:2276580:-1 11/11 None
GENEFINDER00000009240 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2274919:2279147:-1 11/11 None
K09F6.6 ENSEMBL cdna:known chromosome:CEL140:II:2274877:2279147:-1 gene:K09F6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2274917-2281934(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09F6.6
Entrez Gene 173584 Entrez gene
SwissProt O16732 EMBL-EBI
WormBase CE31564 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66196 Hypothetical protein K09F6.6 [Caenorhabditis elegans] ref|NP_494225.2| K09F6.6 [Caenorhabditis elegans] 0.0
blast AAF39853 Hypothetical protein F59H6.2 [Caenorhabditis elegans] ref|NP_494153.1| F59H6.2 [Caenorhabditis elegans] 1.0E-69
blast AAK73887 Hypothetical protein F57C9.4a [Caenorhabditis elegans] ref|NP_491460.1| F57C9.4a [Caenorhabditis elegans] 1.0E-61
blast AAK73888 Hypothetical protein F57C9.4b [Caenorhabditis elegans] ref|NP_491459.1| F57C9.4b [Caenorhabditis elegans] 1.0E-61
blast AAK73887 Hypothetical protein F57C9.4a [Caenorhabditis elegans] ref|NP_491460.1| F57C9.4a [Caenorhabditis elegans] 3.0E-61
blast AAK73888 Hypothetical protein F57C9.4b [Caenorhabditis elegans] ref|NP_491459.1| F57C9.4b [Caenorhabditis elegans] 3.0E-61
Sequence
Target Sequence 
>C. ELEGANS:181370_S_AT
tacactcttgttctggctacgatgttcgatcctccgtacaaagtctggaaattcacatat
aggccgaactccagtggaaaagccgacaaaaacttcaccgatcttcccctggcgtttatg
aatcaactgtttgggctctcctgggacatttgcgattactacttgcctaaagacctactg
gttggttctgaagatacaatcgatgaaactcatccatttctggaaagtctggattgttct
gagcccatcgacgagattatgagaagacgtgaggggagagaaaatgcgaaatcggtcttc
aaatcggcgttttcacgtgctctaaaaagcgttagagcttatcactatgatcttgtcaca
aacactttgaagtactgcgaggagcgaaacacatgcaaggatcacctgtcttggaaccaa
gtacgccactttccaaagctgagcaaaaaaacgaaagccgaatgcaattcagctactcca
tctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACTCTTGTTCTGGCTACGATGT 166 643 3499 Antisense
TTCGATCCTCCGTACAAAGTCTGGA 317 695 3523 Antisense
GCCGACAAAAACTTCACCGATCTTC 640 283 3580 Antisense
ATCTTCCCCTGGCGTTTATGAATCA 528 29 3599 Antisense
TGAATCAACTGTTTGGGCTCTCCTG 287 575 3617 Antisense
GGACATTTGCGATTACTACTTGCCT 350 525 3642 Antisense
AAGTCTGGATTGTTCTGAGCCCATC 683 157 3723 Antisense
TTCAAATCGGCGTTTTCACGTGCTC 241 683 3796 Antisense
GCAAGGATCACCTGTCTTGGAACCA 241 319 3893 Antisense
GTACGCCACTTTCCAAAGCTGAGCA 534 457 3919 Antisense
GAATGCAATTCAGCTACTCCATCTC 526 331 3958 Antisense
Sequence Source Affymetrix Proprietary Database