[Home] | [Total List]

[181369_at]

Description R08C7.4 /REP_DB=WormBase Gene ID /WP=CE07427 /TR=Q21841 /GB=AAC48080.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 49      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 22
(-1.2)
A 		43.8
(3)
A 		37
(1.7)
A 		12.3
(-3)
A 		32
B 23.4
(-2.9)
A 		139.4
(3)
A 		65.6
(-0.7)
A 		21.2
(-3)
A 		118
C 19.5
(-3)
A 		27.7
(-2.3)
A 		89.6
(3)
A 		47.1
(-0.6)
A 		70
avr 21.6
(-3) 		70.3
(3) 		64.1
(2.2) 		26.9
(-2.3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 57.1
(2.4)
A 		62.8
(3)
A 		15.5
(-2.2)
A 		20.3
(-1.6)
A 		32.5
(-0.3)
A 		7.7
(-3)
A 		55
B 24.6
(-3)
A 		72
(2.9)
A 		73.2
(3)
A 		37.3
(-1.4)
A 		24.8
(-2.9)
A 		24.2
(-3)
A 		49
C 14.4
(-3)
A 		71.2
(3)
A 		29.4
(-1.4)
A 		20.2
(-2.4)
A 		39.4
(-0.4)
A 		21
(-2.3)
A 		57
avr 32
(-1.3) 		68.7
(3) 		39.4
(-0.4) 		25.9
(-2) 		32.2
(-1.3) 		17.6
(-3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 8
(1.7)
A 		9.5
(2.8)
A 		9.7
(3)
A 		1.8
(-3)
A 		8
B 7.5
(-2.4)
A 		34.4
(3)
A 		15.2
(-0.9)
A 		4.5
(-3)
A 		30
C 6.5
(-3)
A 		8
(-2.6)
A 		31.2
(3)
A 		7.9
(-2.7)
A 		25
avr 7.3
(-1.9) 		17.3
(2.4) 		18.7
(3) 		4.7
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.5
(-0.5)
A 		22.3
(3)
A 		3.4
(-2.6)
A 		5.1
(-2.1)
A 		9.8
(-0.7)
A 		1.9
(-3)
A 		20
B 8.6
(-3)
A 		24
(3)
A 		17.8
(0.6)
A 		9.9
(-2.5)
A 		10.1
(-2.4)
A 		9
(-2.8)
A 		15
C 5.3
(-2.6)
A 		21.7
(3)
A 		7.5
(-1.8)
A 		4.1
(-3)
A 		12.8
(-0)
A 		7
(-2)
A 		18
avr 8.1
(-2.2) 		22.7
(3) 		9.6
(-1.7) 		6.4
(-2.9) 		10.9
(-1.2) 		6
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181369_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10381
Sequence Type Exemplar sequence
Representative Public ID R08C7.4 NCBI
Target Description R08C7.4 /REP_DB=WormBase Gene ID /WP=CE07427 /TR=Q21841 /GB=AAC48080.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068163(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068163 NCBI Caenorhabditis elegans R08C7.4 (R08C7.4) mRNA, complete cds. 9/11 None
SNAP00000031357 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4435491:4437292:1 9/11 None
GENEFINDER00000031368 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4435120:4437292:1 9/11 None
R08C7.4 ENSEMBL cdna:known chromosome:CEL140:IV:4435120:4437292:1 gene:R08C7.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4435125-4437298(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R08C7.4
Entrez Gene 187696 Entrez gene
SwissProt Q21841 EMBL-EBI
WormBase CE36602 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48080 Hypothetical protein R08C7.4 [Caenorhabditis elegans] ref|NP_500564.2| R08C7.4 [Caenorhabditis elegans] 1.0E-153
blast AAC48080 Hypothetical protein R08C7.4 [Caenorhabditis elegans] ref|NP_500564.2| R08C7.4 [Caenorhabditis elegans] 1.0E-128
blast AAC48080 Hypothetical protein R08C7.4 [Caenorhabditis elegans] ref|NP_500564.2| R08C7.4 [Caenorhabditis elegans] 1.0E-125
blast CAE58528 Hypothetical protein CBG01683 [Caenorhabditis briggsae] 1.0E-120
blast CAE56906 Hypothetical protein CBG24747 [Caenorhabditis briggsae] 1.0E-115
blast CAE56906 Hypothetical protein CBG24747 [Caenorhabditis briggsae] 5.0E-96
blast CAE58528 Hypothetical protein CBG01683 [Caenorhabditis briggsae] 8.0E-93
blast NP_503533 T06A1.1 [Caenorhabditis elegans] gb|AAC17772.1| Hypothetical protein T06A1.1 [Caenorhabditis elegans] 4.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.5E-64
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.4E-91
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.0E-97
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500564.2 1 9-26
R08C7.4 1 9-26
GENEFINDER00000031368 1 9-26
Sequence
Target Sequence 
>C. ELEGANS:181369_AT
gatgagcggctggtatacactggaccacttaacctgagaagctatttgaggagactcccg
ccgaacattggagaagtcagcttcaccacaaatcgagtcttgaaaactgagccagttcct
gtaaaatatagcagtgatgctcaattaatggaagatatgctattcctgaaatacaataaa
accactgaaatcagttggggtcaatgttgtttcggtgccgaaaagatttgggcatgtcag
gtgaatacttttttttgcaatgatcgagaaatttaccgatttattgattttcaatgtttc
aaaatatgtatcgattttctgagaaattatagatttttatttggaaaagctattgaattt
tcaaaaaaaacactaccgaaacatggacaaaaaggctctgaatgggaattggatggaaaa
ctacaacgggacacttcaagaaacccgcctatccaggtcattcgagaaaagattaatttc
ggcagtgagacgacgggtcaaatatgtatacgatcagcgaatggtgaggtgcgaagaaat
tcccgagtggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGCGGCTGGTATACACTGGAC 268 411 493 Antisense
TACACTGGACCACTTAACCTGAGAA 173 641 508 Antisense
GAAGCTATTTGAGGAGACTCCCGCC 244 341 530 Antisense
GAGACTCCCGCCGAACATTGGAGAA 174 393 543 Antisense
AGTCAGCTTCACCACAAATCGAGTC 289 61 567 Antisense
TGGGGTCAATGTTGTTTCGGTGCCG 54 553 688 Antisense
GAATACTTTTTTTTGCAATGATCGA 237 327 735 Antisense
GGGACACTTCAAGAAACCCGCCTAT 649 491 920 Antisense
CCGCCTATCCAGGTCATTCGAGAAA 609 261 937 Antisense
ATTTCGGCAGTGAGACGACGGGTCA 314 17 968 Antisense
GGTGCGAAGAAATTCCCGAGTGGTT 216 499 1020 Antisense
Sequence Source Affymetrix Proprietary Database