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[181368_at]

Description T07H3.2 /REP_DB=WormBase Gene ID /WP=CE19563 /TR=O76610 /GB=AAC26309.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 61      6grp_cgc > 51      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 212.1
(3)
P 		170.7
(1.6)
M 		192.2
(2.3)
A 		37.1
(-3)
A 		175
B 166.6
(3)
P 		103.5
(-0.2)
A 		140.1
(1.6)
A 		50
(-3)
A 		117
C 238.5
(3)
P 		184.5
(1.3)
A 		126.6
(-0.6)
P 		50.5
(-3)
A 		188
avr 205.7
(3) 		152.9
(1) 		153
(1) 		45.9
(-3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 142.1
(2.7)
P 		145
(2.8)
P 		101.7
(0.3)
P 		147.8
(3)
P 		125
(1.7)
A 		45.1
(-3)
A 		103
B 133
(1.6)
P 		154.2
(3)
P 		149
(2.7)
P 		142.7
(2.2)
P 		133.1
(1.6)
A 		64.2
(-3)
A 		90
C 139.2
(0.3)
P 		169.1
(1.7)
A 		115
(-0.8)
P 		196.8
(3)
P 		109.6
(-1.1)
A 		68.5
(-3)
A 		128
avr 138.1
(1.6) 		156.1
(2.6) 		121.9
(0.6) 		162.4
(3) 		122.6
(0.7) 		59.3
(-3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 77.2
(3)
P 		37
(-0.4)
M 		50.2
(0.7)
A 		5.4
(-3)
A 		72
B 53.1
(3)
P 		25.6
(-0.9)
A 		32.5
(0.1)
A 		10.7
(-3)
A 		42
C 79
(3)
P 		53
(0.8)
A 		44.1
(0)
P 		8.5
(-3)
A 		71
avr 69.8
(3) 		38.5
(-0) 		42.3
(0.3) 		8.2
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 26.2
(-0.8)
P 		51.6
(3)
P 		22.2
(-1.3)
P 		37.5
(0.9)
P 		37.7
(0.9)
A 		11
(-3)
A 		41
B 46.3
(1.5)
P 		51.3
(2.4)
P 		36.2
(-0.6)
P 		37.8
(-0.2)
P 		54.1
(3)
A 		23.9
(-3)
A 		30
C 51.6
(3)
P 		51.6
(3)
A 		29.3
(-1.7)
P 		39.6
(0.5)
P 		35.5
(-0.4)
A 		22.9
(-3)
A 		29
avr 41.4
(1.1) 		51.5
(3) 		29.2
(-1.2) 		38.3
(0.5) 		42.4
(1.3) 		19.3
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181368_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5325
Sequence Type Exemplar sequence
Representative Public ID T07H3.2 NCBI
Target Description T07H3.2 /REP_DB=WormBase Gene ID /WP=CE19563 /TR=O76610 /GB=AAC26309.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061603(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061603 NCBI Caenorhabditis elegans T07H3.2 (T07H3.2) mRNA, complete cds. 11/11 None
SNAP00000009954 ENSEMBL cdna:SNAP chromosome:CEL140:II:1598034:1604555:1 11/11 None
GENEFINDER00000009959 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1598073:1599477:1 11/11 None
T07H3.2 ENSEMBL cdna:known chromosome:CEL140:II:1598034:1599477:1 gene:T07H3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1598032-1599476(+) 98.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-46
Ensembl T07H3.2
Entrez Gene 188248 Entrez gene
SwissProt O76610 EMBL-EBI
WormBase CE19563 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494006 Temporarily Assigned Gene name family member (tag-113) [Caenorhabditis elegans] gb|AAC26310.2| Temporarily assigned gene name protein 113 [Caenorhabditis elegans] 0.0
blast NP_494004 T07H3.2 [Caenorhabditis elegans] gb|AAC26309.1| Hypothetical protein T07H3.2 [Caenorhabditis elegans] 1.0E-164
blast NP_494004 T07H3.2 [Caenorhabditis elegans] gb|AAC26309.1| Hypothetical protein T07H3.2 [Caenorhabditis elegans] 1.0E-155
blast NP_494004 T07H3.2 [Caenorhabditis elegans] gb|AAC26309.1| Hypothetical protein T07H3.2 [Caenorhabditis elegans] 1.0E-121
blast NP_494006 Temporarily Assigned Gene name family member (tag-113) [Caenorhabditis elegans] gb|AAC26310.2| Temporarily assigned gene name protein 113 [Caenorhabditis elegans] 8.0E-55
blast NP_494006 Temporarily Assigned Gene name family member (tag-113) [Caenorhabditis elegans] gb|AAC26310.2| Temporarily assigned gene name protein 113 [Caenorhabditis elegans] 1.0E-49
blast AAD12866 Hypothetical protein Y49F6C.4 [Caenorhabditis elegans] ref|NP_494523.1| Y49F6C.4 [Caenorhabditis elegans] 3.0E-32
blast CAE56675 Hypothetical protein CBG24449 [Caenorhabditis briggsae] 1.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.7E-24
Pfam IPR002083 EMBL-EBI MATH 2.0E-13
Pfam IPR002083 EMBL-EBI MATH 1.1E-6
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.6E-6
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.9E-14
Pfam IPR002083 EMBL-EBI MATH 4.7E-24
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.3E-27
Pfam IPR002083 EMBL-EBI MATH 4.7E-24
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.5E-30
Sequence
Target Sequence 
>C. ELEGANS:181368_AT
aattcctgattcacacttcaatggcaaaactggaaacaaaacttgctctagctcagaagt
atgacctaacagagcttcagacacattgcaacgaggagtttcaggcagcttttcctgttc
gggagccagaaattcaaagaaaacctgcgatttatagaaataagttcactttcaagtaca
catttgaaaaatttgatgaagattgcgtgggtggttacaatgttcagctaggttttttat
ggtccctcaacatccaccggaaaaacgaccatctccggataagcctctgctgcgataaac
ctgaaccaactccgtactgggaagtccgcgcggatttccaactagtgctccccggacaag
atgaagctccagtgaccaaaggatacttcagaaatatcgacgaagagctcaagtgcgagg
agctcgggcgggaaattgaatgggaagagatagcggacaagtacccggttgatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCCTGATTCACACTTCAATGGC 50 179 356 Antisense
TTCAGGCAGCTTTTCCTGTTCGGGA 268 687 455 Antisense
TGCGTGGGTGGTTACAATGTTCAGC 280 583 559 Antisense
GTTTTTTATGGTCCCTCAACATCCA 594 447 587 Antisense
GAAAAACGACCATCTCCGGATAAGC 51 355 615 Antisense
TAAGCCTCTGCTGCGATAAACCTGA 78 639 635 Antisense
TAAACCTGAACCAACTCCGTACTGG 207 639 651 Antisense
TGGGAAGTCCGCGCGGATTTCCAAC 621 545 673 Antisense
ACTAGTGCTCCCCGGACAAGATGAA 90 103 696 Antisense
GCGAGGAGCTCGGGCGGGAAATTGA 58 289 770 Antisense
AGCGGACAAGTACCCGGTTGATGGA 181 75 807 Antisense
Sequence Source Affymetrix Proprietary Database