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[181367_at]

Description C31G12.3 /REP_DB=WormBase Gene ID /WP=CE15662 /TR=O17631 /GB=CAB03934.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 5.2
(-2.2)
A 		1.3
(-3)
A 		11.5
(-1)
A 		32.4
(3)
A 		31
B 2
(-3)
A 		3
(-2.8)
A 		2.6
(-2.9)
A 		26.1
(3)
A 		24
C 0.5
(-3)
A 		1.7
(-1.2)
A 		4.6
(3)
A 		2
(-0.8)
A 		4
avr 2.6
(-2.8) 		2
(-3) 		6.2
(-1.6) 		20.2
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 6.9
(3)
A 		1
(-2.8)
A 		2.3
(-1.5)
A 		0.8
(-3)
A 		2.6
(-1.2)
A 		1.1
(-2.7)
A 		6
B 3.5
(-2.3)
A 		2.8
(-2.5)
A 		24.8
(3)
A 		4.2
(-2.1)
A 		0.8
(-3)
A 		0.7
(-3)
A 		24
C 2.1
(-2.4)
A 		1
(-3)
A 		1.4
(-2.8)
A 		12.1
(3)
A 		1.3
(-2.8)
A 		1.3
(-2.8)
A 		11
avr 4.2
(-0.7) 		1.6
(-2.6) 		9.5
(3) 		5.7
(0.3) 		1.6
(-2.6) 		1
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.9
(-0.8)
A 		0.3
(-3)
A 		3
(0.7)
A 		4.7
(3)
A 		4
B 0.6
(-3)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		5.6
(3)
A 		5
C 0.2
(-3)
A 		0.5
(-1.7)
A 		1.6
(3)
A 		0.3
(-2.6)
A 		1
avr 0.9
(-2.2) 		0.5
(-3) 		1.7
(-0.6) 		3.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.3
(3)
A 		0.4
(-1.9)
A 		0.5
(-1.4)
A 		0.2
(-3)
A 		0.8
(0.3)
A 		0.3
(-2.5)
A 		1
B 1.2
(-2.1)
A 		0.9
(-2.4)
A 		6
(3)
A 		1.1
(-2.2)
A 		0.3
(-3)
A 		0.3
(-3)
A 		6
C 0.8
(-1.6)
A 		0.3
(-3)
A 		0.4
(-2.7)
A 		2.4
(3)
A 		0.4
(-2.7)
A 		0.4
(-2.7)
A 		2
avr 1.1
(-0.6) 		0.5
(-2.4) 		2.3
(3) 		1.2
(-0.3) 		0.5
(-2.4) 		0.3
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12549
Sequence Type Exemplar sequence
Representative Public ID C31G12.3 NCBI
Target Description C31G12.3 /REP_DB=WormBase Gene ID /WP=CE15662 /TR=O17631 /GB=CAB03934.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075153(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075153 NCBI Caenorhabditis elegans C31G12.3 (C31G12.3) mRNA, complete cds. 11/11 None
C31G12.3 ENSEMBL cdna:known chromosome:CEL140:V:18187784:18188035:1 gene:C31G12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007429 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18187783-18188035(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31G12.3
Entrez Gene 183092 Entrez gene
SwissProt O17631 EMBL-EBI
WormBase CE15662 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03934 Hypothetical protein C31G12.3 [Caenorhabditis elegans] ref|NP_507554.1| C31G12.3 [Caenorhabditis elegans] 2.0E-34
Sequence
Target Sequence 
>C. ELEGANS:181367_AT
tggaccttcaaacatcttctaaatttcttcaaaaccaactagctcatctatttcaatgcg
aacgagacagtgccgatgttgaaaatagtgagggatgtttttcaactggaaatgatcctg
ctttcaaagatgaacgcctacgttttgaatttcacaccgagccattcaacagacgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACCTTCAAACATCTTCTAAATT 498 547 14 Antisense
TTCAAACATCTTCTAAATTTCTTCA 14 685 20 Antisense
TCTTCAAAACCAACTAGCTCATCTA 142 617 39 Antisense
AGCTCATCTATTTCAATGCGAACGA 562 79 54 Antisense
GCGAACGAGACAGTGCCGATGTTGA 233 289 71 Antisense
AATAGTGAGGGATGTTTTTCAACTG 382 173 97 Antisense
TCAACTGGAAATGATCCTGCTTTCA 439 631 115 Antisense
GATCCTGCTTTCAAAGATGAACGCC 209 417 127 Antisense
GAACGCCTACGTTTTGAATTTCACA 448 345 145 Antisense
TACGTTTTGAATTTCACACCGAGCC 37 649 152 Antisense
CACACCGAGCCATTCAACAGACGTT 708 193 166 Antisense
Sequence Source Affymetrix Proprietary Database