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[181366_at]

Description Y26E6A.1 /REP_DB=WormBase Gene ID /WP=CE16607 /TR=O62418 /GB=CAA19472.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_high_8_8 > 22      6grp_highest_nonorm > 91      6grp_total > 84      4grp_total > 17      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      6grp_total_sub > Hat      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 138.7
(-3)
P 		200
(-0.5)
P 		189.9
(-1)
P 		288.7
(3)
P 		150
B 126.1
(-3)
P 		155.6
(0.1)
M 		172.6
(1.8)
P 		183.7
(3)
P 		58
C 178.7
(-0.9)
P 		173.7
(-1.6)
P 		162.9
(-3)
P 		208.7
(3)
P 		46
avr 147.8
(-3) 		176.4
(-0.8) 		175.1
(-0.9) 		227
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 183.2
(-3)
P 		191.2
(-2.5)
P 		192.6
(-2.4)
P 		194.5
(-2.3)
P 		243.3
(0.9)
P 		274.5
(3)
P 		91
B 149.5
(-3)
P 		159.4
(-2.3)
P 		197
(0.4)
P 		210.1
(1.4)
P 		228.1
(2.6)
P 		233
(3)
P 		84
C 101.6
(-3)
P 		198.1
(-0)
P 		196.9
(-0.1)
P 		297.7
(3)
P 		240.6
(1.3)
P 		211.7
(0.4)
P 		196
avr 144.8
(-3) 		182.9
(-0.6) 		195.5
(0.2) 		234.1
(2.6) 		237.3
(2.8) 		239.7
(3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 50.5
(3)
P 		43.4
(-2.2)
P 		49.6
(2.3)
P 		42.3
(-3)
P 		8
B 40.2
(3)
P 		38.4
(-3)
M 		40
(2.3)
P 		39.1
(-0.7)
P 		2
C 59.2
(3)
P 		50
(0.7)
P 		56.8
(2.4)
P 		35.2
(-3)
P 		24
avr 50
(3) 		43.9
(-0.3) 		48.8
(2.4) 		38.9
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 33.8
(-3)
P 		68
(2.2)
P 		41.9
(-1.8)
P 		49.3
(-0.7)
P 		73.4
(3)
P 		66.8
(2)
P 		40
B 52
(-2.4)
P 		53.1
(-2.3)
P 		47.8
(-3)
P 		55.6
(-2)
P 		92.7
(3)
P 		86.9
(2.2)
P 		45
C 37.7
(-3)
P 		60.4
(0.4)
P 		50.1
(-1.1)
P 		59.9
(0.3)
P 		77.9
(3)
P 		70.9
(2)
P 		40
avr 41.2
(-3) 		60.5
(-0.1) 		46.6
(-2.2) 		54.9
(-1) 		81.3
(3) 		74.9
(2) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181366_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17992
Sequence Type Exemplar sequence
Representative Public ID Y26E6A.1 NCBI
Target Description Y26E6A.1 /REP_DB=WormBase Gene ID /WP=CE16607 /TR=O62418 /GB=CAA19472.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077916(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077916 NCBI Caenorhabditis elegans Y26E6A.1 (Y26E6A.1) mRNA, complete cds. 11/11 None
SNAP00000015478 ENSEMBL cdna:SNAP chromosome:CEL140:X:13915270:13917090:-1 11/11 None
GENEFINDER00000015480 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13915270:13917092:-1 11/11 None
Y26E6A.1 ENSEMBL cdna:known chromosome:CEL140:X:13914789:13917090:-1 gene:Y26E6A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13915269-13917090(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y26E6A.1
Entrez Gene 181500 Entrez gene
SwissProt O62418 EMBL-EBI
WormBase CE16607 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19472 Hypothetical protein Y26E6A.1 [Caenorhabditis elegans] ref|NP_510317.1| Y26E6A.1 [Caenorhabditis elegans] 0.0
blast CAE63065 Hypothetical protein CBG07347 [Caenorhabditis briggsae] 6.0E-29
blast CAE56557 Hypothetical protein CBG24291 [Caenorhabditis briggsae] 5.0E-28
Sequence
Target Sequence 
>C. ELEGANS:181366_AT
gcaggttgcataacttgtgccgagcatttgcttggtgcatgtatgccaaacatgcaaaga
gatgtgtatcaaattcatgccaataagatcgaaaagaccgttatggcacatttcgagcag
tttctagaactcacgaaagaagacggactcggcgaaattatttcgaagcacaccgctcac
tttgactccatccaagattgcattgaagatggacctacagactttgaaactcaaaacaga
cgccatgggacttggtacgaatttcgcaaggataccgttgaagagcagcaattggaaaag
aacaagtacttggaagaaaccattgagaagcatttggtgaagtatcgcagccatcgaact
gaggttaccaaacttattggcttgttcatggacaaaatgcttgcctgtattgaagagctg
aaaaacagcccgcgtcttgctcgcatcattcagctgagaagagttcactgcattgatcct
atccgtggtcaagttccgcttgagggagaggccgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGGTTGCATAACTTGTGCCGAGC 600 311 772 Antisense
GTGCCGAGCATTTGCTTGGTGCATG 333 477 788 Antisense
ATGGCACATTTCGAGCAGTTTCTAG 261 53 874 Antisense
AATTATTTCGAAGCACACCGCTCAC 409 175 927 Antisense
CTCACTTTGACTCCATCCAAGATTG 210 229 947 Antisense
ACAGACGCCATGGGACTTGGTACGA 144 95 1007 Antisense
GAAGTATCGCAGCCATCGAACTGAG 356 335 1110 Antisense
AGCTGAAAAACAGCCCGCGTCTTGC 353 81 1187 Antisense
TCTTGCTCGCATCATTCAGCTGAGA 83 619 1206 Antisense
CACTGCATTGATCCTATCCGTGGTC 198 199 1237 Antisense
GTTCCGCTTGAGGGAGAGGCCGAAG 261 439 1264 Antisense
Sequence Source Affymetrix Proprietary Database