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[181365_at]

Description W06G6.12 /REP_DB=WormBase Gene ID /WP=CE20157 /TR=Q9U337 /GB=CAB05644.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 33      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5
(-3)
A 		11.5
(2.2)
A 		12.5
(3)
A 		10.2
(1.2)
A 		8
B 4
(-3)
A 		7.2
(0.1)
A 		6.3
(-0.8)
A 		10.2
(3)
A 		6
C 6.4
(3)
A 		4.4
(-2)
A 		4
(-3)
A 		5.4
(0.5)
A 		2
avr 5.1
(-3) 		7.7
(1.5) 		7.6
(1.3) 		8.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 6.7
(3)
A 		2.8
(-3)
A 		6
(1.9)
A 		3.1
(-2.5)
A 		2.8
(-3)
A 		6
(1.9)
A 		4
B 3.2
(-1.5)
A 		2.3
(-3)
A 		5.8
(3)
A 		2.6
(-2.5)
A 		2.8
(-2.1)
A 		2.3
(-3)
A 		4
C 6.9
(1.2)
A 		3.4
(-1.9)
A 		2.1
(-3)
A 		6.2
(0.6)
A 		2.4
(-2.7)
A 		8.9
(3)
A 		7
avr 5.6
(2.8) 		2.8
(-2.8) 		4.6
(0.8) 		4
(-0.4) 		2.7
(-3) 		5.7
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.8
(-2)
A 		2.5
(0.3)
A 		3.3
(3)
A 		1.5
(-3)
A 		2
B 1.3
(-3)
A 		1.8
(0.3)
A 		1.4
(-2.3)
A 		2.2
(3)
A 		1
C 2.1
(3)
A 		1.3
(-1)
A 		1.4
(-0.5)
A 		0.9
(-3)
A 		1
avr 1.7
(-0.6) 		1.9
(1.8) 		2
(3) 		1.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.2
(0.4)
A 		1
(-1.3)
A 		1.3
(1.3)
A 		0.8
(-3)
A 		0.9
(-2.1)
A 		1.5
(3)
A 		1
B 1.1
(0.4)
A 		0.8
(-2.1)
A 		1.4
(3)
A 		0.7
(-3)
A 		1.1
(0.4)
A 		0.8
(-2.1)
A 		1
C 2.5
(1.8)
A 		1
(-1.8)
A 		0.5
(-3)
A 		1.2
(-1.3)
A 		0.8
(-2.3)
A 		3
(3)
A 		3
avr 1.6
(1.7) 		0.9
(-3) 		1.1
(-1.7) 		0.9
(-3) 		0.9
(-3) 		1.8
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181365_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13602
Sequence Type Exemplar sequence
Representative Public ID W06G6.12 NCBI
Target Description W06G6.12 /REP_DB=WormBase Gene ID /WP=CE20157 /TR=Q9U337 /GB=CAB05644.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074814(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074814 NCBI Caenorhabditis elegans W06G6.12 (W06G6.12) mRNA, complete cds. 11/11 A 
W06G6.12 ENSEMBL cdna:known chromosome:CEL140:V:16654424:16655926:1 gene:W06G6.12 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000236 7/11 Cross Hyb Matching Probes None
GENEFINDER00000026331 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16654423-16655926(+) 100.0 100.0
chrV:16664695-16666198(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06G6.12
Entrez Gene 189262 Entrez gene
SwissProt Q9U337 EMBL-EBI
WormBase CE20157 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05644 Hypothetical protein W06G6.12 [Caenorhabditis elegans] ref|NP_507215.1| W06G6.12 [Caenorhabditis elegans] 1.0E-150
blast CAA16431 Hypothetical protein Y70C5B.1 [Caenorhabditis elegans] ref|NP_507216.1| Y70C5B.1 [Caenorhabditis elegans] 1.0E-100
blast CAE61204 Hypothetical protein CBG04993 [Caenorhabditis briggsae] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:181365_AT
gaggatcacttggctgccgatgagctcaagatcgggctcggagagatcaaggtcgctgcc
gtcgagccccgattctcgcaggagttcatccaacagcttcagctcaagctttgtacaatg
ctattatttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGATCACTTGGCTGCCGATGAGC 286 403 154 Antisense
ATCACTTGGCTGCCGATGAGCTCAA 37 29 158 Antisense
TTGGCTGCCGATGAGCTCAAGATCG 433 709 163 Antisense
AGCTCAAGATCGGGCTCGGAGAGAT 676 79 176 Antisense
GGCTCGGAGAGATCAAGGTCGCTGC 524 537 188 Antisense
CGGAGAGATCAAGGTCGCTGCCGTC 94 243 192 Antisense
CCGATTCTCGCAGGAGTTCATCCAA 201 265 222 Antisense
GGAGTTCATCCAACAGCTTCAGCTC 662 517 234 Antisense
CCAACAGCTTCAGCTCAAGCTTTGT 601 275 243 Antisense
TCAGCTCAAGCTTTGTACAATGCTA 495 625 252 Antisense
GCTTTGTACAATGCTATTATTTTTC 546 303 261 Antisense
Sequence Source Affymetrix Proprietary Database