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[181364_s_at]

Description F14D2.1 /REP_DB=WormBase Gene ID /WP=CE16976 /TR=O44810 /GB=AAB94956.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 03      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 40.9
(-2.7)
A 		41.4
(-2.7)
A 		31.7
(-3)
A 		217.4
(3)
P 		186
B 81.9
(-2.4)
P 		59.6
(-3)
A 		59.8
(-3)
A 		269.8
(3)
P 		210
C 88.6
(-1.9)
A 		48.7
(-2.9)
A 		42.8
(-3)
P 		299.4
(3)
P 		257
avr 70.5
(-2.3) 		49.9
(-2.9) 		44.8
(-3) 		262.2
(3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 538
1 2 3 4 5 6 range
A 96.7
(-2.3)
A 		51.6
(-3)
A 		120.5
(-1.9)
P 		171.6
(-1.1)
P 		432.1
(3)
P 		433.7
(3)
P 		382
B 46.9
(-3)
A 		51
(-2.9)
P 		114
(-2.1)
A 		145
(-1.8)
P 		356.8
(0.9)
P 		520
(3)
P 		473
C 41.4
(-3)
A 		106.4
(-2.3)
A 		62.5
(-2.8)
A 		129.8
(-2)
P 		353.5
(0.5)
P 		579
(3)
P 		538
avr 61.7
(-3) 		69.7
(-2.9) 		99
(-2.5) 		148.8
(-1.8) 		380.8
(1.3) 		510.9
(3) 		449
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 14.9
(-1.3)
A 		9
(-2.8)
A 		8.3
(-3)
A 		31.8
(3)
P 		24
B 26.1
(-1.3)
P 		14.7
(-2.9)
A 		13.9
(-3)
A 		57.5
(3)
P 		44
C 29.3
(-0.5)
A 		14
(-3)
A 		14.9
(-2.9)
P 		50.5
(3)
P 		37
avr 23.4
(-1.1) 		12.6
(-3) 		12.4
(-3) 		46.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 17.8
(-3)
A 		18.3
(-3)
A 		26.3
(-2.5)
P 		43.5
(-1.6)
P 		130.4
(3)
P 		105.6
(1.7)
P 		113
B 16.3
(-3)
A 		17
(-3)
P 		27.7
(-2.6)
A 		38.4
(-2.3)
P 		145
(1.3)
P 		193.9
(3)
P 		178
C 15.3
(-3)
A 		32.5
(-2.4)
A 		15.9
(-3)
A 		26.1
(-2.6)
P 		114.4
(0.3)
P 		193.8
(3)
P 		179
avr 16.5
(-3) 		22.6
(-2.8) 		23.3
(-2.7) 		36
(-2.2) 		129.9
(1.6) 		164.4
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181364_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4292
Sequence Type Exemplar sequence
Representative Public ID F14D2.1 NCBI
Target Description F14D2.1 /REP_DB=WormBase Gene ID /WP=CE16976 /TR=O44810 /GB=AAB94956.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062117(11), NM_062116(11), NM_001026913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062117 NCBI Caenorhabditis elegans F14D2.1 (F14D2.1) mRNA, complete cds. 11/11 None
NM_062116 NCBI Caenorhabditis elegans F14D2.2 (F14D2.2) mRNA, complete cds. 11/11 None
NM_001026913 NCBI Caenorhabditis elegans F14D2.15 (F14D2.15) mRNA, complete cds. 11/11 None
SNAP00000037059 ENSEMBL cdna:SNAP chromosome:CEL140:II:3340921:3343972:-1 11/11 None
SNAP00000037072 ENSEMBL cdna:SNAP chromosome:CEL140:II:3359141:3361349:1 11/11 None
GENEFINDER00000037073 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3360216:3361349:1 11/11 None
GENEFINDER00000037075 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3342388:3343532:-1 11/11 None
F14D2.15 ENSEMBL cdna:known chromosome:CEL140:II:3342388:3343532:-1 gene:F14D2.15 11/11 None
F14D2.2 ENSEMBL cdna:known chromosome:CEL140:II:3359141:3361172:1 gene:F14D2.2 9/11 A 
F14D2.1 ENSEMBL cdna:known chromosome:CEL140:II:3360216:3361349:1 gene:F14D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3360214-3361348(+) 100.0 100.0
chrII:3342386-3343531(-) 96.33 96.33
Public Domain and Genome References
Gene Title


Gene Symbol bath-27
Ensembl F14D2.15
F14D2.2
F14D2.1
Entrez Gene 173679 Entrez gene
184453 Entrez gene
3565957 Entrez gene
SwissProt O44810 EMBL-EBI
Q6A584 EMBL-EBI
O44809 EMBL-EBI
WormBase CE16976 Wormbase
CE36999 Wormbase
CE16977 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T32791 hypothetical protein F14D2.8 - Caenorhabditis elegans 0.0
blast NP_494518 F14D2.1 [Caenorhabditis elegans] gb|AAB94956.1| Hypothetical protein F14D2.1 [Caenorhabditis elegans] 1.0E-174
blast NP_001022084 F14D2.15 [Caenorhabditis elegans] gb|AAT81201.1| Hypothetical protein F14D2.15 [Caenorhabditis elegans] 1.0E-174
blast T32791 hypothetical protein F14D2.8 - Caenorhabditis elegans 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-83
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.3E-17
Pfam IPR000626 EMBL-EBI Ubiquitin 4.3E-4
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.3E-17
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.3E-17
Sequence
Target Sequence 
>C. ELEGANS:181364_S_AT
aatacctttccatcgaaggacacgtggaaattatcgatatgaccggctatcatgatttcc
agaagcgtgtggatttcggtagtgacgtcactagacggttcgctgatacagtgcttattg
tgagaggacagaggttttatgtgctgaaacagcacctcgctctgcattctccatatttta
aaaatctcctcaaagaatgtacattggattcagaaattcaacttcccgatgtggatacag
atgattttcagaaatatctggaaattttgtacggattttctactattcatgataatttcg
tcgaaggaatcctgcttctcggtaaatttttcgagacggagagaattattacggcttgcg
agaactttttaatcgataaatcgagcaaatcaataagaaaattgttcgagttatctaata
aattccatttgaagaagcttaataagaattgcgttgaaaacatcaaaacatcgacggctc
ttcgtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACCTTTCCATCGAAGGACACGT 709 171 347 Antisense
GATATGACCGGCTATCATGATTTCC 30 427 382 Antisense
GAAGCGTGTGGATTTCGGTAGTGAC 120 343 408 Antisense
GTGACGTCACTAGACGGTTCGCTGA 470 483 428 Antisense
GACGGTTCGCTGATACAGTGCTTAT 421 377 440 Antisense
CGCTCTGCATTCTCCATATTTTAAA 572 255 504 Antisense
ATTCAACTTCCCGATGTGGATACAG 624 11 562 Antisense
TACGGATTTTCTACTATTCATGATA 384 647 616 Antisense
GAATCCTGCTTCTCGGTAAATTTTT 624 325 653 Antisense
TACGGCTTGCGAGAACTTTTTAATC 412 647 696 Antisense
CAAAACATCGACGGCTCTTCGTCTC 444 191 810 Antisense
Sequence Source Affymetrix Proprietary Database