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[181363_at] 7TM receptor, srbc family

Description T06E6.11 /REP_DB=WormBase Gene ID /WP=CE18213 /TR=O62362 /GB=CAB03321.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 03      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 53.4
(-1.6)
A 		5.8
(-3)
A 		69.9
(-1.2)
A 		215.8
(3)
A 		210
B 92.3
(2.7)
A 		96.4
(3)
A 		24.8
(-3)
A 		95.6
(2.9)
A 		72
C 66.8
(-2.1)
A 		57.9
(-2.4)
A 		43.8
(-3)
A 		195.4
(3)
A 		152
avr 70.8
(-1.8) 		53.4
(-2.6) 		46.2
(-3) 		168.9
(3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 44.2
(-3)
A 		69.6
(0.4)
A 		53.9
(-1.7)
A 		55
(-1.6)
A 		89.3
(3)
A 		54.1
(-1.7)
A 		45
B 65.5
(0.1)
A 		119.5
(3)
A 		58.6
(-0.3)
A 		8
(-3)
A 		71.3
(0.4)
A 		23.8
(-2.1)
A 		112
C 41.5
(-1.7)
A 		128.8
(3)
A 		38.2
(-1.8)
A 		65.5
(-0.4)
A 		16.7
(-3)
A 		64.1
(-0.5)
A 		112
avr 50.4
(-2.3) 		106
(3) 		50.2
(-2.3) 		42.8
(-3) 		59.1
(-1.5) 		47.3
(-2.6) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 19.4
(0.6)
A 		1.3
(-3)
A 		18.3
(0.4)
A 		31.6
(3)
A 		30
B 29.4
(3)
A 		23.8
(1.6)
A 		5.7
(-3)
A 		20.4
(0.7)
A 		24
C 22.1
(-0.7)
A 		16.6
(-2.6)
A 		15.3
(-3)
A 		32.9
(3)
A 		18
avr 23.6
(1.1) 		13.9
(-2.7) 		13.1
(-3) 		28.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 8.1
(-3)
A 		24.8
(2.3)
A 		11.7
(-1.9)
A 		13.9
(-1.1)
A 		26.9
(3)
A 		13.2
(-1.4)
A 		19
B 22.8
(0.3)
A 		39.8
(3)
A 		14.2
(-1.1)
A 		2.1
(-3)
A 		28.9
(1.3)
A 		8.9
(-1.9)
A 		38
C 15.4
(-1.2)
A 		39.3
(3)
A 		9.7
(-2.2)
A 		13.2
(-1.6)
A 		5.4
(-3)
A 		21.5
(-0.2)
A 		34
avr 15.4
(-1.6) 		34.6
(3) 		11.9
(-2.5) 		9.7
(-3) 		20.4
(-0.4) 		14.5
(-1.8) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181363_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13109
Sequence Type Exemplar sequence
Representative Public ID T06E6.11 NCBI
Target Description T06E6.11 /REP_DB=WormBase Gene ID /WP=CE18213 /TR=O62362 /GB=CAB03321.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074431(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074431 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-63) (srbc-63) mRNA, complete cds. 11/11 None
T06E6.11 ENSEMBL cdna:known chromosome:CEL140:V:15414019:15415311:-1 gene:T06E6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15414018-15415311(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-63
Ensembl T06E6.11
Entrez Gene 188190 Entrez gene
SwissProt O62362 EMBL-EBI
WormBase CE18213 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03321 Hypothetical protein T06E6.11 [Caenorhabditis elegans] ref|NP_506832.1| Serpentine Receptor, class BC (class B-like) family member (srbc-63) [Caenorhabditis elegans] 1.0E-159
blast CAB07483 Hypothetical protein T19C9.1 [Caenorhabditis elegans] ref|NP_507360.1| Serpentine Receptor, class BC (class B-like) family member (srbc-62) [Caenorhabditis elegans] 7.0E-89
blast CAA16502 Hypothetical protein F08E10.2 [Caenorhabditis elegans] ref|NP_507425.1| Serpentine Receptor, class BC (class B-like) family member (srbc-61) [Caenorhabditis elegans] 5.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 4.8E-104
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506832.1 7 10-32,45-67,82-102,123-145,177-199,206-228,243-265
T06E6.11 7 10-32,45-67,82-102,123-145,177-199,206-228,243-265
Sequence
Target Sequence 
>C. ELEGANS:181363_AT
tttttcctcacttggccaacaaacgtatgcatcaccattcggcctattcttgtaatcctc
attaaccaggacagaatctttgctacctgctttccaatatcataccacattcatcgccac
aaaatctcaacaagtgatgtttctttattcctgctggcttgtgcacttttcaatcaatac
atcctttttggatactgtagaaatgtgatagatgttccattagaatgtgataattttaag
tgcactgtgaacgagtgttattatggtttctggctctcatttgaacactattcatatgtt
ctaattgtgatcttgtcggcaactatagttattcgcctttacatgtgttatttgaaagga
acgcaattgaatgcagtttttgcaagagcaactctcattgcattgattgattcaattata
atattaaccttcaatgctctcccaccaacggtgctcaaacaattccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTCCTCACTTGGCCAACAAACG 595 673 256 Antisense
ACAAACGTATGCATCACCATTCGGC 513 111 274 Antisense
GGCCTATTCTTGTAATCCTCATTAA 590 541 296 Antisense
AGGACAGAATCTTTGCTACCTGCTT 622 55 323 Antisense
GCTACCTGCTTTCCAATATCATACC 434 303 337 Antisense
ACATTCATCGCCACAAAATCTCAAC 412 105 362 Antisense
AGTGATGTTTCTTTATTCCTGCTGG 625 59 388 Antisense
CTGCTGGCTTGTGCACTTTTCAATC 480 237 406 Antisense
GGTTTCTGGCTCTCATTTGAACACT 638 505 520 Antisense
AGTTATTCGCCTTTACATGTGTTAT 312 63 582 Antisense
CACCAACGGTGCTCAAACAATTCCC 672 199 698 Antisense
Sequence Source Affymetrix Proprietary Database