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[181362_at]

Description T11F1.7 /REP_DB=WormBase Gene ID /WP=CE23978 /TR=Q9N4N5 /GB=AAF40002.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 6.2
(-2.8)
A 		16.3
(-1.6)
A 		4.1
(-3)
A 		55.6
(3)
A 		52
B 15.1
(-3)
A 		24.7
(-0.7)
A 		25.3
(-0.6)
A 		40.1
(3)
A 		25
C 5.4
(-3)
A 		36.4
(3)
A 		9.7
(-2.2)
A 		28.6
(1.5)
A 		31
avr 8.9
(-3) 		25.8
(0.1) 		13
(-2.2) 		41.4
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 3.1
(-2.7)
A 		1.6
(-3)
A 		28.3
(3)
A 		24.8
(2.2)
A 		8
(-1.6)
A 		4.7
(-2.3)
A 		27
B 1.9
(-2.8)
A 		1.4
(-3)
A 		15.8
(3)
A 		1.7
(-2.9)
A 		1.4
(-3)
A 		5
(-1.5)
A 		14
C 1.3
(-3)
A 		11.4
(1.2)
A 		7.5
(-0.4)
A 		15.6
(3)
A 		2.5
(-2.5)
A 		6.7
(-0.7)
A 		14
avr 2.1
(-3) 		4.8
(-1.9) 		17.2
(3) 		14
(1.7) 		4
(-2.2) 		5.5
(-1.6) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.3
(-2)
A 		3.5
(-0.9)
A 		1.1
(-3)
A 		8.1
(3)
A 		7
B 4.8
(-3)
A 		6.1
(-0.9)
A 		5.9
(-1.2)
A 		8.5
(3)
A 		4
C 1.8
(-3)
A 		10.5
(3)
A 		3.4
(-1.9)
A 		4.8
(-0.9)
A 		9
avr 3
(-3) 		6.7
(2.4) 		3.5
(-2.3) 		7.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.6
(-3)
A 		6.2
(2.9)
A 		6.3
(3)
A 		2.4
(-1.1)
A 		1.1
(-2.5)
A 		6
B 0.7
(-2.6)
A 		0.5
(-3)
A 		3.8
(3)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		1.8
(-0.6)
A 		3
C 0.5
(-3)
A 		3.5
(3)
A 		1.9
(-0.2)
A 		3.1
(2.2)
A 		0.8
(-2.4)
A 		2.2
(0.4)
A 		3
avr 0.6
(-3) 		1.5
(-1.4) 		4
(3) 		3.3
(1.8) 		1.3
(-1.8) 		1.7
(-1.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181362_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5840
Sequence Type Exemplar sequence
Representative Public ID T11F1.7 NCBI
Target Description T11F1.7 /REP_DB=WormBase Gene ID /WP=CE23978 /TR=Q9N4N5 /GB=AAF40002.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062005 NCBI Caenorhabditis elegans T11F1.7 (T11F1.7) mRNA, complete cds. 11/11 None
T11F1.7 ENSEMBL cdna:known chromosome:CEL140:II:2940992:2944061:-1 gene:T11F1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009463 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2940990-2944060(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T11F1.7
Entrez Gene 188414 Entrez gene
SwissProt Q8MNX4 EMBL-EBI
WormBase CE23978 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAM34815 Hypothetical protein T11F1.7 [Caenorhabditis elegans] ref|NP_494406.1| T11F1.7 [Caenorhabditis elegans] 0.0
blast AAF39999 Hypothetical protein ZK355.5 [Caenorhabditis elegans] ref|NP_494404.1| ZK355.5 [Caenorhabditis elegans] 1.0E-112
blast D88086 protein T11F1.7 [imported] - Caenorhabditis elegans 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.1E-21
Sequence
Target Sequence 
>C. ELEGANS:181362_AT
gcacatcgctttttggcgacgtggtggtcgatgctaacgatggaagatttttgtacaagc
ttttctacgttggtacaatatttggctccttgaaaattcaatattcaaagattgagggct
tattctttttgtctaatcttgttacgattgccaacttggatggtaggaatttaagaattt
tcagagaaattggagaattttcagcgtcccggccagcagtgctaatacgatccaataaat
ttctcacgcaagcagttttgcctgctctagagaatgtaatttccgtcggcaacgaaacaa
tagtcctctacgataatgaagcattattcgagaataatgacaagtgtctcctgtttcggc
ttacttataatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACATCGCTTTTTGGCGACGTGGT 269 311 1088 Antisense
GACGTGGTGGTCGATGCTAACGATG 368 377 1105 Antisense
GTTGGTACAATATTTGGCTCCTTGA 91 437 1156 Antisense
ATCTTGTTACGATTGCCAACTTGGA 83 31 1223 Antisense
ATTGGAGAATTTTCAGCGTCCCGGC 155 3 1276 Antisense
GCCAGCAGTGCTAATACGATCCAAT 197 281 1299 Antisense
GATCCAATAAATTTCTCACGCAAGC 86 415 1316 Antisense
CACGCAAGCAGTTTTGCCTGCTCTA 288 199 1332 Antisense
GAGAATGTAATTTCCGTCGGCAACG 197 389 1357 Antisense
GGCAACGAAACAATAGTCCTCTACG 62 535 1375 Antisense
CTCCTGTTTCGGCTTACTTATAATG 299 233 1435 Antisense
Sequence Source Affymetrix Proprietary Database