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[181361_at]

Description K07C6.1 /REP_DB=WormBase Gene ID /WP=CE17172 /TR=O44653 /GB=AAB94244.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 20      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 41.1
(0.1)
A 		20.9
(-2.2)
A 		13.6
(-3)
A 		67
(3)
P 		53
B 51.9
(0.5)
A 		62
(3)
A 		38.1
(-2.9)
A 		37.8
(-3)
P 		24
C 48.8
(-2.1)
P 		47.7
(-2.2)
A 		32.4
(-3)
A 		144.5
(3)
P 		112
avr 47.3
(-0.9) 		43.5
(-1.3) 		28
(-3) 		83.1
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 77.5
(3)
P 		14.2
(-2.2)
A 		50.1
(0.7)
P 		14
(-2.3)
A 		25.8
(-1.3)
A 		5.1
(-3)
A 		72
B 4.4
(-2.6)
A 		42.3
(3)
A 		20
(-0.3)
A 		32.8
(1.6)
A 		17.4
(-0.7)
A 		2
(-3)
A 		40
C 1.9
(-3)
A 		67.2
(2.9)
P 		22.6
(-1.1)
A 		68.3
(3)
P 		20.3
(-1.3)
A 		26.3
(-0.8)
A 		66
avr 27.9
(0.3) 		41.2
(3) 		30.9
(0.9) 		38.4
(2.4) 		21.2
(-1) 		11.1
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 14.9
(3)
A 		4.5
(-2.5)
A 		3.5
(-3)
A 		9.8
(0.3)
P 		11
B 16.6
(3)
A 		15.3
(2.1)
A 		8.8
(-2.5)
A 		8.1
(-3)
P 		9
C 16.2
(-0.8)
P 		13.7
(-1.9)
A 		11.3
(-3)
A 		24.4
(3)
P 		13
avr 15.9
(3) 		11.2
(-0.5) 		7.9
(-3) 		14.1
(1.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 14.3
(3)
P 		5.1
(-1.2)
A 		10.9
(1.4)
P 		3.6
(-1.9)
A 		7.8
(0)
A 		1.2
(-3)
A 		13
B 1.5
(-2.6)
A 		14.1
(3)
A 		4.9
(-1.1)
A 		8.7
(0.6)
A 		7.1
(-0.1)
A 		0.7
(-3)
A 		13
C 0.7
(-3)
A 		20.5
(3)
P 		5.8
(-1.5)
A 		13.7
(0.9)
P 		6.6
(-1.2)
A 		8.8
(-0.5)
A 		20
avr 5.5
(-1.8) 		13.2
(3) 		7.2
(-0.8) 		8.7
(0.2) 		7.2
(-0.8) 		3.6
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181361_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15200
Sequence Type Exemplar sequence
Representative Public ID K07C6.1 NCBI
Target Description K07C6.1 /REP_DB=WormBase Gene ID /WP=CE17172 /TR=O44653 /GB=AAB94244.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K07C6.1 ENSEMBL cdna:pseudogene chromosome:CEL140:V:3947178:3948765:1 gene:K07C6.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3947454-3948710(+) 100.0 100.0
Public Domain and Genome References
Ensembl K07C6.1
Sequence
Target Sequence 
>C. ELEGANS:181361_AT
ttctggtctattttgtaacactgcaggtgtttcatgttttattattcctgctagccattc
aaaacttcttgcgattttttgtttcattgagattattgtttctgcagacctcaattcaaa
aatatgttaagcgtatttatatatttttcattttgaaagactttgttagttttttaattt
cgaaatttgataataagttgcctcaaaatgtttggcatgccggtcagattttatacttgg
taacattgctcatattaaatttactacttcccatgatgtctccactgatctacaccccaa
taattgtgaaaacaaaaataaataacaccgatatgtattcgcagcaccatgctcatattc
ataaatatgttttctggcaaaatgtttcggtattttcgtttaaaacggtagtaaacccat
ttgcaaagactggattaaatgttcaaaaaattttggattcagatctccttgccatatata
tttcaagatctcgactttgtccaaattataggaagactgtcatatttatggtgcaatcga
cactttttgttcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGGTCTATTTTGTAACACTGCA 281 693 248 Antisense
GTTTTATTATTCCTGCTAGCCATTC 290 449 283 Antisense
ACTTCTTGCGATTTTTTGTTTCATT 332 103 311 Antisense
TTGTTTCTGCAGACCTCAATTCAAA 306 705 343 Antisense
GTTTGGCATGCCGGTCAGATTTTAT 172 453 457 Antisense
AATTTACTACTTCCCATGATGTCTC 467 175 505 Antisense
CACTGATCTACACCCCAATAATTGT 226 199 530 Antisense
GTATTCGCAGCACCATGCTCATATT 370 453 582 Antisense
TGGATTCAGATCTCCTTGCCATATA 335 551 701 Antisense
ATTTCAAGATCTCGACTTTGTCCAA 688 15 727 Antisense
GTGCAATCGACACTTTTTGTTCACC 225 481 778 Antisense
Sequence Source Affymetrix Proprietary Database