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[181359_at]

Description F14D2.4 /REP_DB=WormBase Gene ID /WP=CE16979 /TR=O44805 /GB=AAB94962.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 3.4
(-3)
A 		24.9
(0.9)
A 		5.5
(-2.6)
A 		36.9
(3)
A 		34
B 4.4
(-1.2)
A 		3.7
(-3)
A 		4
(-2.2)
A 		6
(3)
A 		2
C 1.7
(-3)
A 		4.5
(-2.6)
A 		2.2
(-2.9)
A 		44.6
(3)
A 		43
avr 3.2
(-3) 		11
(-1.2) 		3.9
(-2.8) 		29.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 6.3
(-2.6)
A 		4
(-3)
A 		12
(-1.5)
A 		16.7
(-0.6)
A 		36.4
(3)
A 		9.2
(-2)
A 		32
B 2.3
(-2.9)
A 		1.8
(-3)
A 		5
(-2.6)
A 		39.1
(1.9)
A 		25.6
(0.1)
A 		47.9
(3)
A 		46
C 1.5
(-3)
A 		4.2
(-2.6)
A 		13.8
(-1.2)
A 		2.6
(-2.8)
A 		7.1
(-2.2)
A 		42.7
(3)
A 		41
avr 3.4
(-3) 		3.3
(-3) 		10.3
(-1.6) 		19.5
(0.2) 		23
(0.9) 		33.3
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.2
(-3)
A 		5.4
(3)
A 		1.4
(-2.7)
A 		5.4
(3)
A 		4
B 1.4
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.3
(1.8)
A 		0
C 0.6
(-3)
A 		1.3
(-2.4)
A 		0.8
(-2.8)
A 		7.5
(3)
A 		7
avr 1.1
(-2.8) 		2.5
(-0.6) 		1
(-3) 		4.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.2
(-3)
A 		1.4
(-2.9)
A 		2.6
(-2.1)
A 		4.2
(-1.2)
A 		11
(3)
A 		2.2
(-2.4)
A 		10
B 0.8
(-2.9)
A 		0.6
(-3)
A 		1.2
(-2.8)
A 		10.3
(0.4)
A 		10.4
(0.4)
A 		17.9
(3)
A 		17
C 0.6
(-3)
A 		1.3
(-2.7)
A 		3.5
(-1.7)
A 		0.5
(-3)
A 		2.3
(-2.2)
A 		14.3
(3)
A 		14
avr 0.9
(-3) 		1.1
(-2.9) 		2.4
(-2.2) 		5
(-0.7) 		7.9
(1) 		11.5
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5307
Sequence Type Exemplar sequence
Representative Public ID F14D2.4 NCBI
Target Description F14D2.4 /REP_DB=WormBase Gene ID /WP=CE16979 /TR=O44805 /GB=AAB94962.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026914(10), NM_001026915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026914 NCBI Caenorhabditis elegans F14D2.4a (F14D2.4) mRNA, complete cds. 10/11 None
NM_001026915 NCBI Caenorhabditis elegans F14D2.4b (F14D2.4) mRNA, complete cds. 11/11 None
SNAP00000037066 ENSEMBL cdna:SNAP chromosome:CEL140:II:3350254:3352195:1 11/11 None
GENEFINDER00000037085 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3350254:3351854:1 11/11 None
F14D2.4b ENSEMBL cdna:known chromosome:CEL140:II:3350254:3351854:1 gene:F14D2.4 11/11 A 
F14D2.4a ENSEMBL cdna:known chromosome:CEL140:II:3350254:3358965:1 gene:F14D2.4 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3350252-3351013(+) 83.27 83.27
Public Domain and Genome References
Ensembl F14D2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022085 F14D2.4a [Caenorhabditis elegans] gb|AAB94962.2| Hypothetical protein F14D2.4a [Caenorhabditis elegans] 0.0
blast NP_494512 F14D2.12 [Caenorhabditis elegans] gb|AAM98035.1| Hypothetical protein F14D2.12 [Caenorhabditis elegans] 1.0E-169
blast T32791 hypothetical protein F14D2.8 - Caenorhabditis elegans 1.0E-163
blast NP_001022086 F14D2.4b [Caenorhabditis elegans] gb|AAQ65204.1| Hypothetical protein F14D2.4b [Caenorhabditis elegans] 1.0E-153
blast NP_001022086 F14D2.4b [Caenorhabditis elegans] gb|AAQ65204.1| Hypothetical protein F14D2.4b [Caenorhabditis elegans] 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.4E-36
Pfam IPR000210 EMBL-EBI BTB/POZ domain 9.6E-29
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.5E-16
Sequence
Target Sequence 
>C. ELEGANS:181359_AT
tgtacgaatctcaaggaccaggaaatgtggtcgatcttctcggagcttgagctgaagctt
gtttcagtttattccgacaccagggatcaaaaatgcaagatagacatgtgttttggacac
gattctggaaaattctactcctcgtacggctggagcgagtttattagctggaatgagctg
gaaacaagctttatggaagccggaagtatcactgtagaagcccgcgtgcttattaataaa
tcaattggattttatacaccgaaattaatggatttcgacgagaaaatgatggaatactcg
gatattgtggttttggtgaatggacaacgattttatttgctgaaaaagttcctcgccttt
cattcaactttcttcgaatccctgttcctcggcggtttctacgaggcgaaactcgccgaa
gtgcccctctacgacattgatgtagacgattttcagaagtttctcgaagttttgtacgga
ttcccggttattaatgtaatcgtcccaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACGAATCTCAAGGACCAGGAAA 548 559 184 Antisense
CAGGAAATGTGGTCGATCTTCTCGG 302 209 202 Antisense
TCGATCTTCTCGGAGCTTGAGCTGA 340 603 214 Antisense
TGAGCTGAAGCTTGTTTCAGTTTAT 573 567 231 Antisense
AGTTTATTCCGACACCAGGGATCAA 319 1 249 Antisense
TATGGAAGCCGGAAGTATCACTGTA 627 653 375 Antisense
CACTGTAGAAGCCCGCGTGCTTATT 238 197 393 Antisense
AGCCCGCGTGCTTATTAATAAATCA 518 83 402 Antisense
GAATGGACAACGATTTTATTTGCTG 309 333 501 Antisense
GAGGCGAAACTCGCCGAAGTGCCCC 355 399 586 Antisense
GGTTATTAATGTAATCGTCCCAATC 158 507 669 Antisense
Sequence Source Affymetrix Proprietary Database