[Home] | [Total List]

[181358_at]

Description C01B4.2 /REP_DB=WormBase Gene ID /WP=CE20471 /TR=Q9UAU1 /GB=AAD14694.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 9.9
(-1.9)
A 		22.9
(-0)
A 		1.7
(-3)
A 		44.6
(3)
A 		43
B 3.3
(-3)
A 		7.3
(-1.6)
A 		3.9
(-2.8)
A 		19.9
(3)
A 		17
C 20.6
(-1.1)
A 		4.1
(-2.9)
A 		3.3
(-3)
A 		57.3
(3)
A 		54
avr 11.3
(-1.7) 		11.4
(-1.7) 		3
(-3) 		40.6
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 49.4
(3)
A 		2.2
(-3)
A 		1.9
(-3)
A 		23.3
(-0.3)
A 		2.1
(-3)
A 		10.1
(-2)
A 		48
B 19.3
(3)
A 		10.8
(-0.1)
A 		5.8
(-1.9)
A 		7.3
(-1.3)
A 		2.6
(-3)
A 		4.5
(-2.3)
A 		17
C 2.5
(-0.6)
A 		3.5
(1.1)
A 		1.9
(-1.5)
A 		4.7
(3)
A 		1
(-3)
A 		3.7
(1.4)
A 		4
avr 23.7
(3) 		5.5
(-2) 		3.2
(-2.6) 		11.8
(-0.3) 		1.9
(-3) 		6.1
(-1.8) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.6
(0.1)
A 		5
(1.5)
A 		0.5
(-3)
A 		6.5
(3)
A 		6
B 1
(-2.8)
A 		1.8
(-1.4)
A 		0.9
(-3)
A 		4.2
(3)
A 		3
C 6.8
(1)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		9.7
(3)
A 		9
avr 3.8
(0) 		2.7
(-1.1) 		0.8
(-3) 		6.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.1
(3)
A 		0.8
(-2.7)
A 		0.4
(-3)
A 		5.9
(0.8)
A 		0.6
(-2.9)
A 		2.5
(-1.6)
A 		9
B 6.7
(3)
A 		3.6
(-0.3)
A 		1.4
(-2.6)
A 		1.9
(-2.1)
A 		1
(-3)
A 		1.7
(-2.3)
A 		6
C 0.9
(1)
A 		1.1
(2.3)
A 		0.5
(-1.7)
A 		1
(1.7)
A 		0.3
(-3)
A 		1.2
(3)
A 		1
avr 5.6
(3) 		1.8
(-1.6) 		0.8
(-2.8) 		2.9
(-0.2) 		0.6
(-3) 		1.8
(-1.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181358_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15263
Sequence Type Exemplar sequence
Representative Public ID C01B4.2 NCBI
Target Description C01B4.2 /REP_DB=WormBase Gene ID /WP=CE20471 /TR=Q9UAU1 /GB=AAD14694.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C01B4.2 ENSEMBL cdna:known chromosome:CEL140:V:2515695:2517136:1 gene:C01B4.2 None
C01B4.2 ENSEMBL cdna:known chromosome:CEL140:V:2515695:2517136:1 gene:C01B4.2 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2407415-2408857(+) 66.08 100.0
chrV:2515694-2517136(+) 66.08 100.0
Public Domain and Genome References
Ensembl C01B4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T33949 hypothetical protein C01B4.2 - Caenorhabditis elegans 1.0E-51
blast T33946 hypothetical protein C01B4.4 - Caenorhabditis elegans 2.0E-27
blast AAD14697 Serpentine receptor, class d (delta) protein 61 [Caenorhabditis elegans] ref|NP_001024221.1| Serpentine Receptor, class D (delta) family member (srd-75) [Caenorhabditis elegans] ref|NP_503685.1| Serpentine Receptor, class D (delta) family member (srd-61) [Caenorhabditis elegans] gb|AAW88389.1| Hypothetical protein Y19D10A.15 [Caenorhabditis elegans] 5.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
C01B4.2 2 25-47,59-81
Sequence
Target Sequence 
>C. ELEGANS:181358_AT
tgagcatctctctttccaagacatactgggtgtggcaatcgactgttctgcaattgtcaa
atatgatcgagcaaagttccaaaatttctgaaaaatatttttttttggtcgacttccaaa
attatgagtggcaaaaaataattaattgtcattttttgacaataaataaaaaattttcaa
acatttttttgaattgttttattatgatattcggtcattttggcaccatattaggcctaa
cttttcaagttatcttaccacttgtctgctatgttcctgttacatttatgtattgttgga
ataagtattccggcgaccaaatccttatatcacaatacactctggcatttatgggtacac
ttccgtgtattttcgatccgctacttcaaatgtattttatactgccttaccgaaagacgg
ttcagaaatttattgcacgttctccatttaaaccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCATCTCTCTTTCCAAGACATA 367 569 14 Antisense
CATACTGGGTGTGGCAATCGACTGT 709 213 35 Antisense
GGCAATCGACTGTTCTGCAATTGTC 476 533 47 Antisense
GATCGAGCAAAGTTCCAAAATTTCT 563 413 78 Antisense
GATATTCGGTCATTTTGGCACCATA 469 427 219 Antisense
GGCACCATATTAGGCCTAACTTTTC 113 535 235 Antisense
GAATAAGTATTCCGGCGACCAAATC 342 325 312 Antisense
TTCCGGCGACCAAATCCTTATATCA 19 701 321 Antisense
CCTTATATCACAATACACTCTGGCA 378 269 336 Antisense
GAAATTTATTGCACGTTCTCCATTT 269 363 438 Antisense
TGCACGTTCTCCATTTAAACCAAAT 374 577 447 Antisense
Sequence Source Affymetrix Proprietary Database