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[181357_s_at]

Description T02H6.7 /REP_DB=WormBase Gene ID /WP=CE21143 /TR=Q9N5E9 /GB=AAF39966.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 9.1
(-3)
A 		45
(3)
A 		19.1
(-1.3)
A 		42.1
(2.5)
A 		36
B 3.7
(-3)
A 		32.4
(3)
A 		18
(-0)
A 		6.8
(-2.4)
A 		29
C 14
(-3)
A 		23.8
(-1.1)
A 		24.6
(-0.9)
A 		44.5
(3)
P 		31
avr 8.9
(-3) 		33.7
(3) 		20.6
(-0.2) 		31.1
(2.4) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 4.1
(-2.7)
A 		1.4
(-3)
A 		2.5
(-2.9)
A 		20.8
(-1.1)
A 		62.5
(3)
A 		16
(-1.6)
A 		61
B 2.1
(-2.9)
A 		1.5
(-3)
A 		1.5
(-3)
A 		13.9
(-0.8)
A 		19
(0.1)
A 		35.8
(3)
A 		34
C 1.1
(-3)
A 		4.8
(-2.6)
A 		5.6
(-2.5)
A 		16.7
(-1.4)
A 		27.8
(-0.3)
P 		60.6
(3)
P 		60
avr 2.4
(-3) 		2.6
(-3) 		3.2
(-2.9) 		17.1
(-0.5) 		36.4
(2.8) 		37.5
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.3
(-3)
A 		9.8
(3)
A 		5
(-1.4)
A 		6.2
(-0.3)
A 		7
B 1.2
(-3)
A 		8
(3)
A 		4.2
(-0.4)
A 		1.5
(-2.7)
A 		7
C 4.6
(-3)
A 		6.8
(0.3)
A 		8.6
(3)
A 		7.5
(1.4)
P 		4
avr 3
(-3) 		8.2
(3) 		5.9
(0.3) 		5.1
(-0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		0.5
(-3)
A 		0.5
(-3)
A 		5.3
(-1.4)
A 		18.9
(3)
A 		3.9
(-1.9)
A 		18
B 0.7
(-2.9)
A 		0.5
(-3)
A 		0.4
(-3)
A 		3.7
(-1.5)
A 		7.7
(0.4)
A 		13.4
(3)
A 		13
C 0.4
(-3)
A 		1.5
(-2.7)
A 		1.4
(-2.7)
A 		3.4
(-2.1)
A 		9
(-0.4)
P 		20.3
(3)
P 		20
avr 0.6
(-3) 		0.8
(-2.9) 		0.8
(-2.9) 		4.1
(-1.2) 		11.9
(2.7) 		12.5
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181357_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4277
Sequence Type Exemplar sequence
Representative Public ID T02H6.7 NCBI
Target Description T02H6.7 /REP_DB=WormBase Gene ID /WP=CE21143 /TR=Q9N5E9 /GB=AAF39966.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061392(11), NM_061389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061392 NCBI Caenorhabditis elegans T02H6.4 (T02H6.4) mRNA, complete cds. 11/11 A 
NM_061389 NCBI Caenorhabditis elegans T02H6.7 (T02H6.7) mRNA, complete cds. 11/11 A 
SNAP00000003363 ENSEMBL cdna:SNAP chromosome:CEL140:II:680838:683326:1 11/11 None
SNAP00000003366 ENSEMBL cdna:SNAP chromosome:CEL140:II:690055:691017:1 11/11 None
GENEFINDER00000003371 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:690055:691090:1 11/11 None
GENEFINDER00000003377 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:679031:684122:1 11/11 None
T02H6.7 ENSEMBL cdna:known chromosome:CEL140:II:682675:683326:1 gene:T02H6.7 11/11 A 
T02H6.4 ENSEMBL cdna:known chromosome:CEL140:II:690055:691090:1 gene:T02H6.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:682674-683326(+) 100.0 100.0
chrII:690054-691090(+) 95.24 95.24
Public Domain and Genome References
Gene Title

Ensembl T02H6.7
T02H6.4
Entrez Gene 188004 Entrez gene
188006 Entrez gene
SwissProt Q9N5E6 EMBL-EBI
Q9N5E9 EMBL-EBI
WormBase CE21140 Wormbase
CE21143 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39961 Hypothetical protein T02H6.4 [Caenorhabditis elegans] ref|NP_493793.1| T02H6.4 [Caenorhabditis elegans] 1.0E-109
blast AAF39967 Hypothetical protein T02H6.9 [Caenorhabditis elegans] ref|NP_493787.1| T02H6.9 [Caenorhabditis elegans] 1.0E-103
blast AAF39966 Hypothetical protein T02H6.7 [Caenorhabditis elegans] ref|NP_493790.1| T02H6.7 [Caenorhabditis elegans] 1.0E-102
blast AAF39961 Hypothetical protein T02H6.4 [Caenorhabditis elegans] ref|NP_493793.1| T02H6.4 [Caenorhabditis elegans] 6.0E-87
blast AAF39966 Hypothetical protein T02H6.7 [Caenorhabditis elegans] ref|NP_493790.1| T02H6.7 [Caenorhabditis elegans] 2.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 6.5E-25
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 8.5E-21
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 9.5E-24
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 7.0E-110
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 8.2E-25
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 6.5E-25
Sequence
Target Sequence 
>C. ELEGANS:181357_S_AT
ggatgcactcgtcacaacgtgatgaacgggttccagctcaaatttgaaggaccgcaaggg
atctttaagaacgatcatggtgttgtctcaatcagcttcttctgcaatccaccagacgga
ctcaccaatgacgccatttccaacaagcttgttgttaagccggagctcccatttggccac
tggagagagattcaatggtgcccgaatggaactgttatcatcggaatacaaaccaaatct
gaccgtggtagaattgacaaagctggtatcaccaactttgctgccaagtgcggacgtccg
gaagtcagaactggaactgagacctgggcttgggagaatctcgatacttttggcggttgg
gacaaggaaatcaattgtccggttggagaggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGCACTCGTCACAACGTGATGA 158 513 85 Antisense
AACGTGATGAACGGGTTCCAGCTCA 309 143 100 Antisense
GAACGGGTTCCAGCTCAAATTTGAA 330 347 108 Antisense
GGACCGCAAGGGATCTTTAAGAACG 297 523 133 Antisense
GAACGATCATGGTGTTGTCTCAATC 709 347 153 Antisense
ATGGTGTTGTCTCAATCAGCTTCTT 645 49 161 Antisense
GATTCAATGGTGCCCGAATGGAACT 121 431 273 Antisense
GTGCCCGAATGGAACTGTTATCATC 347 479 282 Antisense
ACTGTTATCATCGGAATACAAACCA 240 97 295 Antisense
ACAAACCAAATCTGACCGTGGTAGA 287 111 312 Antisense
ATCAATTGTCCGGTTGGAGAGGCAA 656 25 454 Antisense
Sequence Source Affymetrix Proprietary Database