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[181356_at]

Description T02H6.7 /REP_DB=WormBase Gene ID /WP=CE21143 /TR=Q9N5E9 /GB=AAF39966.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 46      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 6.2
(-3)
A 		13.3
(3)
A 		6.7
(-2.6)
A 		7.7
(-1.7)
A 		7
B 24.4
(3)
A 		3.5
(-3)
A 		11.8
(-0.6)
A 		5.9
(-2.3)
A 		21
C 27.9
(3)
A 		7.2
(-2.2)
A 		5
(-2.8)
A 		4.2
(-3)
A 		24
avr 19.5
(3) 		8
(-2.1) 		7.8
(-2.2) 		5.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 4.5
(-3)
A 		9.3
(-1.8)
A 		14.1
(-0.6)
A 		28.1
(3)
A 		9
(-1.9)
A 		15.5
(-0.2)
A 		24
B 1.4
(-3)
A 		2.9
(-1.4)
A 		5.9
(1.7)
A 		5.4
(1.1)
A 		5
(0.7)
A 		7.2
(3)
A 		6
C 13.1
(-1.3)
A 		6.1
(-2.7)
A 		9.2
(-2.1)
A 		8.4
(-2.2)
A 		33.3
(3)
A 		4.8
(-3)
A 		29
avr 6.3
(-2.9) 		6.1
(-3) 		9.7
(-0.8) 		14
(1.9) 		15.8
(3) 		9.2
(-1.1) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.2
(0.7)
A 		2.9
(3)
A 		1.8
(-0.7)
A 		1.1
(-3)
A 		2
B 7.8
(3)
A 		0.9
(-3)
A 		2.7
(-1.4)
A 		1.3
(-2.7)
A 		7
C 9.2
(3)
A 		2.1
(-2)
A 		1.7
(-2.3)
A 		0.7
(-3)
A 		9
avr 6.4
(3) 		2
(-1.9) 		2.1
(-1.8) 		1
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-3)
A 		3.3
(-0.6)
A 		3.1
(-0.8)
A 		7.1
(3)
A 		2.7
(-1.2)
A 		3.8
(-0.1)
A 		6
B 0.5
(-3)
A 		1
(-1.6)
A 		1.4
(-0.5)
A 		1.4
(-0.5)
A 		2
(1.1)
A 		2.7
(3)
A 		2
C 4.9
(-0.8)
A 		1.9
(-2.8)
A 		2.3
(-2.5)
A 		1.7
(-2.9)
A 		10.8
(3)
A 		1.6
(-3)
A 		9
avr 2.1
(-3) 		2.1
(-3) 		2.3
(-2.6) 		3.4
(-0.5) 		5.2
(3) 		2.7
(-1.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181356_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4277
Sequence Type Exemplar sequence
Representative Public ID T02H6.7 NCBI
Target Description T02H6.7 /REP_DB=WormBase Gene ID /WP=CE21143 /TR=Q9N5E9 /GB=AAF39966.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061389 NCBI Caenorhabditis elegans T02H6.7 (T02H6.7) mRNA, complete cds. 11/11 A 
SNAP00000003363 ENSEMBL cdna:SNAP chromosome:CEL140:II:680838:683326:1 11/11 None
GENEFINDER00000003377 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:679031:684122:1 11/11 None
T02H6.7 ENSEMBL cdna:known chromosome:CEL140:II:682675:683326:1 gene:T02H6.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:682674-683326(+) 100.0 100.0
chrII:690054-691090(+) 95.24 95.24
Public Domain and Genome References
Gene Title
Ensembl T02H6.7
Entrez Gene 188006 Entrez gene
SwissProt Q9N5E9 EMBL-EBI
WormBase CE21143 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39967 Hypothetical protein T02H6.9 [Caenorhabditis elegans] ref|NP_493787.1| T02H6.9 [Caenorhabditis elegans] 1.0E-103
blast AAF39966 Hypothetical protein T02H6.7 [Caenorhabditis elegans] ref|NP_493790.1| T02H6.7 [Caenorhabditis elegans] 1.0E-102
blast AAF39961 Hypothetical protein T02H6.4 [Caenorhabditis elegans] ref|NP_493793.1| T02H6.4 [Caenorhabditis elegans] 6.0E-87
blast AAF39961 Hypothetical protein T02H6.4 [Caenorhabditis elegans] ref|NP_493793.1| T02H6.4 [Caenorhabditis elegans] 2.0E-86
blast AAF39966 Hypothetical protein T02H6.7 [Caenorhabditis elegans] ref|NP_493790.1| T02H6.7 [Caenorhabditis elegans] 3.0E-85
blast AAF39960 Hypothetical protein T02H6.8 [Caenorhabditis elegans] ref|NP_493789.1| T02H6.8 [Caenorhabditis elegans] 8.0E-78
blast AAF39961 Hypothetical protein T02H6.4 [Caenorhabditis elegans] ref|NP_493793.1| T02H6.4 [Caenorhabditis elegans] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 6.5E-25
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 7.0E-110
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 8.2E-25
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 6.5E-25
Sequence
Target Sequence 
>C. ELEGANS:181356_AT
ttctgcaatccaccagacggactcaccaatgacgccatttccaacaagcttgttgttaag
ccggagctcccatttggccactggagagagattcaatggtgcccgaatggaactgttatc
atcggaatacaaaccaaatctgaccgtggtagaattgacaaagctggtatcaccaacttt
gctgccaagtgcggacgtccggaagtcagaactggaactgagacctgggcttgggagaat
ctcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGCAATCCACCAGACGGACTCA 298 693 184 Antisense
CCAACAAGCTTGTTGTTAAGCCGGA 408 275 224 Antisense
TTGTTGTTAAGCCGGAGCTCCCATT 308 705 233 Antisense
AGCTCCCATTTGGCCACTGGAGAGA 240 81 248 Antisense
GAATTGACAAAGCTGGTATCACCAA 37 323 335 Antisense
CTGGTATCACCAACTTTGCTGCCAA 383 241 347 Antisense
ACCAACTTTGCTGCCAAGTGCGGAC 89 85 355 Antisense
CGGACGTCCGGAAGTCAGAACTGGA 651 237 375 Antisense
GAACTGGAACTGAGACCTGGGCTTG 94 349 392 Antisense
GGAACTGAGACCTGGGCTTGGGAGA 579 525 397 Antisense
GACCTGGGCTTGGGAGAATCTCGAT 368 383 405 Antisense
Sequence Source Affymetrix Proprietary Database