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[181354_at]

Description F53G2.1 /REP_DB=WormBase Gene ID /WP=CE10990 /TR=O17249 /GB=AAB71019.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 6.2
(-2.9)
A 		14.3
(-1.8)
A 		5.7
(-3)
A 		49.1
(3)
A 		43
B 39.5
(3)
A 		6.9
(-2.2)
A 		2.2
(-3)
A 		2.1
(-3)
A 		37
C 15.5
(-1.6)
A 		30
(-0.1)
A 		2.9
(-3)
A 		58.6
(3)
A 		56
avr 20.4
(0.1) 		17.1
(-0.5) 		3.6
(-3) 		36.6
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 2.6
(-3)
A 		5.7
(-2)
A 		21.9
(3)
A 		4.7
(-2.3)
A 		4
(-2.6)
A 		7.7
(-1.4)
A 		19
B 12.1
(-2)
A 		19.2
(-0.8)
A 		42.8
(3)
A 		23.2
(-0.2)
A 		5.6
(-3)
A 		21
(-0.5)
A 		37
C 7.8
(-1.8)
A 		1.4
(-3)
A 		3.8
(-2.5)
A 		25.1
(1.6)
A 		4.7
(-2.4)
A 		32.6
(3)
A 		31
avr 7.5
(-2.1) 		8.8
(-1.7) 		22.8
(3) 		17.7
(1.3) 		4.8
(-3) 		20.4
(2.2) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.2
(-2.3)
A 		3.1
(-1.3)
A 		1.5
(-3)
A 		7.2
(3)
A 		6
B 12.6
(3)
A 		1.7
(-2.4)
A 		0.5
(-3)
A 		0.4
(-3)
A 		12
C 5.1
(-0.2)
A 		8.6
(2.1)
A 		1
(-3)
A 		9.9
(3)
A 		9
avr 6.6
(3) 		4.5
(0.8) 		1
(-3) 		5.8
(2.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2
(-0.9)
A 		4.8
(3)
A 		1.2
(-2)
A 		1.2
(-2)
A 		1.9
(-1)
A 		4
B 4.2
(-1.6)
A 		6.4
(0)
A 		10.4
(3)
A 		6.2
(-0.1)
A 		2.3
(-3)
A 		7.8
(1.1)
A 		8
C 2.9
(-1.6)
A 		0.4
(-3)
A 		1
(-2.7)
A 		5
(-0.4)
A 		1.5
(-2.4)
A 		10.9
(3)
A 		11
avr 2.5
(-2.1) 		2.9
(-1.6) 		5.4
(1.3) 		4.1
(-0.2) 		1.7
(-3) 		6.9
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181354_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4766
Sequence Type Exemplar sequence
Representative Public ID F53G2.1 NCBI
Target Description F53G2.1 /REP_DB=WormBase Gene ID /WP=CE10990 /TR=O17249 /GB=AAB71019.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061883(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061883 NCBI Caenorhabditis elegans F53G2.1 (F53G2.1) mRNA, complete cds. 11/11 None
GENEFINDER00000038771 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2495184:2496642:1 11/11 None
F53G2.1 ENSEMBL cdna:known chromosome:CEL140:II:2488755:2496642:1 gene:F53G2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2488753-2496641(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53G2.1
Entrez Gene 186184 Entrez gene
SwissProt O17249 EMBL-EBI
WormBase CE10990 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71019 Hypothetical protein F53G2.1 [Caenorhabditis elegans] ref|NP_494284.1| F53G2.1 [Caenorhabditis elegans] 0.0
blast CAB02846 Hypothetical protein C48D1.1 [Caenorhabditis elegans] ref|NP_502537.2| C48D1.1 [Caenorhabditis elegans] 1.0E-69
blast CAA92801 Hypothetical protein C33A12.12 [Caenorhabditis elegans] emb|CAA22147.1| Hypothetical protein C33A12.12 [Caenorhabditis elegans] ref|NP_501674.1| C33A12.12 [Caenorhabditis elegans] emb|CAB16465.1| C33A12.12 [Caenorhabditis elegans] 2.0E-67
blast NP_490966 Y39G10AR.5 [Caenorhabditis elegans] gb|AAK39609.2| Hypothetical protein Y39G10AR.5 [Caenorhabditis elegans] 1.0E-15
blast CAA97786 Hypothetical protein F12F6.8 [Caenorhabditis elegans] ref|NP_502176.1| F12F6.8 [Caenorhabditis elegans] 1.0E-10
Sequence
Target Sequence 
>C. ELEGANS:181354_AT
atcgagttacgaggcctgcaaatatttggaaggaattaactttgttagtgtactattaga
ttgcatgaggagtttcaacaatgatcagataaatgttcaatgtctcgcagtcatggtaaa
tttagcccgtcatttagaatacaaatgttttggaattaaaatgcgattggatttctacat
tttcttcagcgcaagtttttgcgatacaaaaaaagaatcaacatactatggatgcacata
tattgcacttttgctgatcagttcggagaagcaaaacagtaattgttggtactgggatga
tgcaaatgatttgctgatggaaaactgctcaaattacttgccttcatcaatcgcacacta
ttataaacatttgattacccttgactttctccacgatattcttaaaacgacaaaaggaat
tggtctaattctctgggctctttcgacaatacggatatatttgagaagtattagtaaaat
tagcagacagttcaagtgtaatcttattttcaccattaccaaaatttcctgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGAGTTACGAGGCCTGCAAATAT 378 35 1554 Antisense
AAATGTTCAATGTCTCGCAGTCATG 8 121 1644 Antisense
GCAGTCATGGTAAATTTAGCCCGTC 305 311 1660 Antisense
GGATTTCTACATTTTCTTCAGCGCA 41 511 1722 Antisense
TGCACTTTTGCTGATCAGTTCGGAG 517 577 1797 Antisense
TTGCCTTCATCAATCGCACACTATT 331 701 1891 Antisense
AACATTTGATTACCCTTGACTTTCT 578 137 1919 Antisense
TTGACTTTCTCCACGATATTCTTAA 604 705 1934 Antisense
GGAATTGGTCTAATTCTCTGGGCTC 677 533 1969 Antisense
CTCTGGGCTCTTTCGACAATACGGA 665 231 1984 Antisense
TTCACCATTACCAAAATTTCCTGCA 3 687 2062 Antisense
Sequence Source Affymetrix Proprietary Database