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[181352_at]

Description B0546.3 /REP_DB=WormBase Gene ID /WP=CE16794 /TR=O44439 /GB=AAB92013.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 80.1
(-1.2)
P 		47
(-2.7)
A 		40.4
(-3)
A 		174.5
(3)
P 		134
B 80.5
(-1.8)
P 		65.7
(-3)
A 		70.2
(-2.6)
A 		138.7
(3)
P 		73
C 74.8
(0.9)
P 		53.3
(-1.9)
A 		44.6
(-3)
A 		90.7
(3)
P 		46
avr 78.5
(-1.1) 		55.3
(-2.7) 		51.7
(-3) 		134.6
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 74.8
(3)
A 		31.4
(-3)
A 		55.7
(0.4)
P 		40.6
(-1.7)
A 		44.3
(-1.2)
A 		62.2
(1.3)
A 		43
B 66.9
(2.1)
P 		75.3
(3)
P 		65.7
(2)
P 		67
(2.1)
A 		19.7
(-3)
A 		42.2
(-0.6)
P 		56
C 42.7
(-3)
A 		56.8
(-0.7)
P 		78.8
(3)
A 		64.5
(0.6)
A 		47
(-2.3)
A 		48.9
(-2)
P 		36
avr 61.5
(1.9) 		54.5
(0.5) 		66.7
(3) 		57.4
(1.1) 		37
(-3) 		51.1
(-0.2) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 29.2
(3)
P 		10.2
(-3)
A 		10.6
(-2.9)
A 		25.5
(1.8)
P 		19
B 25.7
(1.3)
P 		16.2
(-3)
A 		16.3
(-3)
A 		29.6
(3)
P 		13
C 24.8
(3)
P 		15.3
(-3)
A 		15.5
(-2.9)
A 		15.3
(-3)
P 		10
avr 26.6
(3) 		13.9
(-3) 		14.1
(-2.9) 		23.5
(1.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 13.8
(1.3)
A 		11.2
(-1.9)
A 		12.1
(-0.8)
P 		10.3
(-3)
A 		13.4
(0.8)
A 		15.2
(3)
A 		5
B 23.3
(2.4)
P 		25.1
(3)
P 		16
(-0.2)
P 		17.7
(0.4)
A 		8
(-3)
A 		15.7
(-0.3)
P 		17
C 15.8
(-0.6)
A 		17.3
(0.7)
P 		20
(3)
A 		13
(-3)
A 		15.2
(-1.1)
A 		16.4
(-0.1)
P 		7
avr 17.6
(2.7) 		17.9
(3) 		16
(1) 		13.7
(-1.4) 		12.2
(-3) 		15.8
(0.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181352_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11029
Sequence Type Exemplar sequence
Representative Public ID B0546.3 NCBI
Target Description B0546.3 /REP_DB=WormBase Gene ID /WP=CE16794 /TR=O44439 /GB=AAB92013.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067933(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067933 NCBI Caenorhabditis elegans B0546.3 (B0546.3) mRNA, complete cds. 11/11 None
B0546.3 ENSEMBL cdna:known chromosome:CEL140:IV:3378594:3382108:-1 gene:B0546.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001409 6/11 Cross Hyb Matching Probes None
GENEFINDER00000001418 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3378599-3382114(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0546.3
Entrez Gene 182030 Entrez gene
SwissProt O44439 EMBL-EBI
WormBase CE16794 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92013 Hypothetical protein B0546.3 [Caenorhabditis elegans] ref|NP_500334.1| B0546.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004910 EMBL-EBI Yippee-like protein 9.9E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500334.1 2 394-416,429-448
B0546.3 2 394-416,429-448
Sequence
Target Sequence 
>C. ELEGANS:181352_AT
gcacaatttcagccgcaattcggtggccgcgtacaggctcacttattccctcagccaggc
tttgttcaatttgaaaatttggagcatatcattggcgaggagcatcacgccgagtatcaa
cagctccgtgaagactatcggcaagctcatgtagatttaattgggcctgagcttgaacaa
cgacggcaagagattttggatcgaatgcgggagatttataatatgcgaagaccttatcca
aatgatcctctatttttactcgaaaatcgcaattttccgattttttttctcagaagtttt
gagaaaaccccgattttttgggaaaaaatatatccttttttcagaattttccgctttttt
tccaatttctacacatttccagtagtttttgaaatagattttctcccgatttttctcgtt
gcaaatattgtgattttccatagcttttacctgtattttccccgttttttccaggtttct
cacaatttttcttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAATTTCAGCCGCAATTCGGTG 516 317 823 Antisense
TTCCCTCAGCCAGGCTTTGTTCAAT 494 697 868 Antisense
GGAGCATATCATTGGCGAGGAGCAT 534 519 903 Antisense
TCACGCCGAGTATCAACAGCTCCGT 403 625 927 Antisense
GAAGACTATCGGCAAGCTCATGTAG 678 337 952 Antisense
TGGGCCTGAGCTTGAACAACGACGG 64 555 984 Antisense
GAAGACCTTATCCAAATGATCCTCT 229 339 1049 Antisense
AATGATCCTCTATTTTTACTCGAAA 543 163 1063 Antisense
TTCTCCCGATTTTTCTCGTTGCAAA 151 687 1223 Antisense
GTGATTTTCCATAGCTTTTACCTGT 374 485 1252 Antisense
CAGGTTTCTCACAATTTTTCTTCTT 615 207 1294 Antisense
Sequence Source Affymetrix Proprietary Database