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[181351_at]

Description C08G5.3 /REP_DB=WormBase Gene ID /WP=CE19692 /TR=Q9TZL4 /GB=AAC67421.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 48      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 22
(-2.2)
A 		13.8
(-2.8)
A 		91.6
(3)
P 		10.6
(-3)
A 		81
B 12.6
(-2.6)
A 		71.7
(3)
A 		33.6
(-0.6)
A 		8
(-3)
A 		64
C 25.5
(-1.1)
A 		13.8
(-3)
A 		23.3
(-1.4)
A 		50.5
(3)
A 		37
avr 20
(-3) 		33.1
(-0.3) 		49.5
(3) 		23
(-2.4) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 22.4
(-1.7)
A 		10
(-3)
A 		10.2
(-3)
A 		31.1
(-0.8)
A 		67.9
(3)
A 		34.6
(-0.5)
A 		58
B 27.7
(-0.5)
A 		9
(-3)
A 		31.9
(0.1)
A 		53.5
(3)
A 		31.9
(0.1)
A 		43.8
(1.7)
A 		45
C 10.6
(-2.8)
A 		44.3
(-0.4)
A 		94.1
(3)
A 		79.5
(2)
A 		12.9
(-2.6)
A 		7.3
(-3)
A 		87
avr 20.2
(-3) 		21.1
(-2.8) 		45.4
(1.4) 		54.7
(3) 		37.6
(0) 		28.6
(-1.5) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 8
(-1.3)
A 		3
(-2.6)
A 		24
(3)
P 		1.6
(-3)
A 		22
B 4
(-2.1)
A 		17.7
(3)
A 		7.8
(-0.7)
A 		1.7
(-3)
A 		16
C 8.4
(2.9)
A 		4
(-3)
A 		8.1
(2.5)
A 		8.5
(3)
A 		5
avr 6.8
(-1.1) 		8.2
(-0.3) 		13.3
(3) 		3.9
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 4.1
(-2.4)
A 		3.6
(-2.5)
A 		2.2
(-3)
A 		7.9
(-1.1)
A 		20.5
(3)
A 		8.4
(-1)
A 		18
B 9.6
(-0)
A 		3
(-3)
A 		7.8
(-0.8)
A 		14.2
(2.1)
A 		12.9
(1.5)
A 		16.3
(3)
A 		13
C 3.9
(-2.6)
A 		13.5
(0.1)
A 		23.9
(3)
A 		16
(0.8)
A 		4.2
(-2.5)
A 		2.4
(-3)
A 		22
avr 5.9
(-3) 		6.7
(-2.3) 		11.3
(1.8) 		12.7
(3) 		12.5
(2.8) 		9
(-0.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181351_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4772
Sequence Type Exemplar sequence
Representative Public ID C08G5.3 NCBI
Target Description C08G5.3 /REP_DB=WormBase Gene ID /WP=CE19692 /TR=Q9TZL4 /GB=AAC67421.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061400(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061400 NCBI Caenorhabditis elegans C08G5.3 (C08G5.3) mRNA, complete cds. 11/11 None
SNAP00000029167 ENSEMBL cdna:SNAP chromosome:CEL140:II:743105:745013:-1 11/11 None
GENEFINDER00000029174 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:742505:750170:-1 11/11 None
C08G5.3 ENSEMBL cdna:known chromosome:CEL140:II:743105:745013:-1 gene:C08G5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:743104-745013(-) 95.64 100.0
Public Domain and Genome References
Gene Title
Ensembl C08G5.3
Entrez Gene 182426 Entrez gene
SwissProt Q9TZL4 EMBL-EBI
WormBase CE19692 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67421 Hypothetical protein C08G5.3 [Caenorhabditis elegans] ref|NP_493801.1| C08G5.3 [Caenorhabditis elegans] 0.0
blast AAC67422 Synaptotagmin protein 6 [Caenorhabditis elegans] ref|NP_493802.2| SyNapTotagmin family member (snt-6) [Caenorhabditis elegans] 0.0
blast AAC67421 Hypothetical protein C08G5.3 [Caenorhabditis elegans] ref|NP_493801.1| C08G5.3 [Caenorhabditis elegans] 1.0E-169
blast CAE56559 Hypothetical protein CBG24293 [Caenorhabditis briggsae] 3.0E-89
blast NP_500684 Y9C9A.1 [Caenorhabditis elegans] gb|AAF60927.1| Hypothetical protein Y9C9A.1 [Caenorhabditis elegans] 9.0E-24
blast CAE68539 Hypothetical protein CBG14366 [Caenorhabditis briggsae] 6.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 1.0E-94
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 1.3E-21
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 1.4E-65
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 9.2E-21
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 4.9E-69
Pfam IPR000008 EMBL-EBI C2 domain 3.8E-34
Pfam IPR000008 EMBL-EBI C2 domain 1.7E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029174 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:181351_AT
gacggcacgcgattaacaaacccagcagctgggagaacaatctgttttgctcgccgggct
atgtggcttgtgggtttcgagtgaaaattcagaaggcccaaggaccaggaacagacaata
tcggtttggagaacttgcagcttaaatgttgtgacatttggaattgcacaattggatatg
gattccgtcaccttggagagtgggctaacgaagatgaaaagaattcaaaatccgaaacac
aacacttgacaggatatttccgaacaatcggctctatgaaatatgtaaacgacaaggaaa
aatcttttgtgctcagcaagtttcacgaaagtatagataattctacgatcgtcgaagcaa
tcaatagtatttttccgggtaacaagtacactagtgagcagttgaaggcaatggtgacgg
acagcatgctctggaacaagtctatgcctttaaaagtgaaaattcccgcccgaactgaaa
tacgcagtgctcaacttttgctaaaatgtggtcaatatcaagtgggactcaatctgacta
aatcccaatccagacacttgccaaagtacccaagaggaccagctacaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGCACGCGATTAACAAACCCAG 155 375 461 Antisense
GAGAACAATCTGTTTTGCTCGCCGG 275 393 493 Antisense
TCGCCGGGCTATGTGGCTTGTGGGT 4 599 511 Antisense
GAAGGCCCAAGGACCAGGAACAGAC 392 333 552 Antisense
GATTCCGTCACCTTGGAGAGTGGGC 519 433 641 Antisense
GTGACGGACAGCATGCTCTGGAACA 415 483 874 Antisense
GCTCTGGAACAAGTCTATGCCTTTA 174 299 888 Antisense
TTCCCGCCCGAACTGAAATACGCAG 212 695 923 Antisense
GACTCAATCTGACTAAATCCCAATC 419 373 986 Antisense
CCCAATCCAGACACTTGCCAAAGTA 449 257 1004 Antisense
TACCCAAGAGGACCAGCTACACCGA 389 647 1027 Antisense
Sequence Source Affymetrix Proprietary Database