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[181350_at]

Description Y38H6C.4 /REP_DB=WormBase Gene ID /WP=CE19098 /TR=Q9XX54 /GB=CAA20984.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 0      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 35.9
(3)
A 		7.8
(-3)
A 		20.8
(-0.2)
A 		10
(-2.5)
A 		28
B 7
(-3)
A 		22.2
(2)
A 		25.2
(3)
A 		7.2
(-2.9)
A 		18
C 7.2
(-3)
A 		9.8
(-2.7)
A 		11.1
(-2.5)
A 		58.3
(3)
A 		51
avr 16.7
(-1.3) 		13.3
(-3) 		19
(-0.1) 		25.2
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 8
(-1.9)
A 		15
(3)
A 		9.2
(-1.1)
A 		8.6
(-1.5)
A 		7.9
(-2)
A 		6.5
(-3)
A 		9
B 8.2
(-2.5)
A 		43.3
(3)
A 		8.4
(-2.5)
A 		6.4
(-2.8)
A 		5
(-3)
A 		5.1
(-3)
A 		38
C 12.9
(-2.3)
A 		66.6
(3)
A 		9.2
(-2.7)
A 		7.3
(-2.9)
A 		6.2
(-3)
A 		6.3
(-3)
A 		60
avr 9.7
(-2.4) 		41.6
(3) 		8.9
(-2.5) 		7.4
(-2.8) 		6.4
(-2.9) 		6
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.1
(3)
A 		1.7
(-2.9)
A 		5.4
(-1)
A 		1.5
(-3)
A 		12
B 2.2
(-2)
A 		5.5
(2.6)
A 		5.8
(3)
A 		1.5
(-3)
A 		4
C 2.4
(-3)
A 		2.8
(-2.7)
A 		3.9
(-1.8)
A 		9.8
(3)
A 		7
avr 5.9
(3) 		3.3
(-3) 		5
(0.9) 		4.3
(-0.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.5
(-3)
A 		5.3
(3)
A 		2
(-2.2)
A 		2.2
(-1.9)
A 		2.4
(-1.6)
A 		1.6
(-2.8)
A 		4
B 2.9
(-2.4)
A 		14.4
(3)
A 		2
(-2.9)
A 		1.7
(-3)
A 		2.1
(-2.8)
A 		1.9
(-2.9)
A 		13
C 4.8
(-1.9)
A 		20.3
(3)
A 		2.3
(-2.7)
A 		1.5
(-3)
A 		2
(-2.8)
A 		2.1
(-2.8)
A 		19
avr 3.1
(-2.3) 		13.3
(3) 		2.1
(-2.8) 		1.8
(-3) 		2.2
(-2.8) 		1.9
(-2.9) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181350_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14734
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.4 NCBI
Target Description Y38H6C.4 /REP_DB=WormBase Gene ID /WP=CE19098 /TR=Q9XX54 /GB=CAA20984.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075546(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075546 NCBI Caenorhabditis elegans Y38H6C.4 (Y38H6C.4) mRNA, complete cds. 11/11 None
SNAP00000041316 ENSEMBL cdna:SNAP chromosome:CEL140:V:20502951:20503148:-1 11/11 None
GENEFINDER00000041339 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20502951:20503148:-1 11/11 None
Y38H6C.4 ENSEMBL cdna:known chromosome:CEL140:V:20502951:20503148:-1 gene:Y38H6C.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20502950-20503148(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38H6C.4
Entrez Gene 189685 Entrez gene
SwissProt Q9XX54 EMBL-EBI
WormBase CE19098 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20984 Hypothetical protein Y38H6C.4 [Caenorhabditis elegans] ref|NP_507947.1| Y38H6C.4 [Caenorhabditis elegans] 2.0E-31
Sequence
Target Sequence 
>C. ELEGANS:181350_AT
tgaaggaacccgtcaagccaacggtcaaactagctgaaattcctccacgagagccgagat
tcacaccggagcaagagcgaatctacgcgagactcagcgttcatgatccatttaatatgt
tgagcgagcagcacaaggcaaatctcatccagctgatgacccacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGGAACCCGTCAAGCCAACGGT 416 571 14 Antisense
TCAAGCCAACGGTCAAACTAGCTGA 496 631 26 Antisense
ACTAGCTGAAATTCCTCCACGAGAG 670 101 42 Antisense
AATTCCTCCACGAGAGCCGAGATTC 21 179 51 Antisense
GAGAGCCGAGATTCACACCGGAGCA 500 393 62 Antisense
TTCACACCGGAGCAAGAGCGAATCT 85 669 73 Antisense
GAGCGAATCTACGCGAGACTCAGCG 471 385 88 Antisense
GAGACTCAGCGTTCATGATCCATTT 693 393 102 Antisense
TATGTTGAGCGAGCAGCACAAGGCA 51 655 129 Antisense
GCACAAGGCAAATCTCATCCAGCTG 479 317 144 Antisense
TCTCATCCAGCTGATGACCCACGGA 667 611 156 Antisense
Sequence Source Affymetrix Proprietary Database