[Home] | [Total List]

[181349_at]

Description F40G12.9 /REP_DB=WormBase Gene ID /WP=CE10192 /TR=Q20251 /GB=CAB01188.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 4.9
(-3)
A 		11.1
(-2.6)
A 		32.2
(-1.1)
A 		91.5
(3)
A 		87
B 2.1
(-3)
A 		25.1
(1.5)
A 		32.6
(3)
A 		19.9
(0.5)
A 		31
C 6
(-3)
A 		8.6
(-2.6)
A 		11.4
(-2.1)
A 		42
(3)
A 		36
avr 4.3
(-3) 		14.9
(-1.6) 		25.4
(-0.3) 		51.1
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 47
(3)
A 		44.3
(2.6)
A 		33.1
(1.1)
A 		2.6
(-3)
A 		3.7
(-2.9)
A 		12.4
(-1.7)
A 		44
B 20
(-0.3)
A 		41.3
(3)
A 		22
(0)
A 		3.8
(-2.8)
A 		14.5
(-1.2)
A 		2.7
(-3)
A 		39
C 16
(-1.4)
A 		28.6
(0.3)
A 		49.1
(3)
A 		35.3
(1.2)
A 		26.5
(-0)
A 		4.2
(-3)
A 		45
avr 27.7
(1) 		38.1
(3) 		34.7
(2.4) 		13.9
(-1.6) 		14.9
(-1.4) 		6.4
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.8
(-3)
A 		2.4
(-2.7)
A 		8.4
(0.4)
A 		13.4
(3)
A 		12
B 0.7
(-3)
A 		6.2
(1.8)
A 		7.6
(3)
A 		4.2
(0)
A 		7
C 2
(-3)
A 		2.5
(-2.4)
A 		4
(-0.6)
A 		7.1
(3)
A 		5
avr 1.5
(-3) 		3.7
(-1) 		6.7
(1.7) 		8.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.7
(0.2)
A 		15.8
(3)
A 		7.2
(-0.4)
A 		0.7
(-3)
A 		1.1
(-2.8)
A 		3
(-2.1)
A 		15
B 7
(-0.2)
A 		13.8
(3)
A 		5.3
(-1)
A 		1
(-3)
A 		5.9
(-0.7)
A 		1
(-3)
A 		13
C 5.9
(-0.6)
A 		8.7
(0.9)
A 		12.5
(3)
A 		7.1
(0.1)
A 		8.6
(0.9)
A 		1.4
(-3)
A 		11
avr 7.2
(-0.1) 		12.8
(3) 		8.3
(0.5) 		2.9
(-2.4) 		5.2
(-1.1) 		1.8
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181349_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13064
Sequence Type Exemplar sequence
Representative Public ID F40G12.9 NCBI
Target Description F40G12.9 /REP_DB=WormBase Gene ID /WP=CE10192 /TR=Q20251 /GB=CAB01188.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074135 NCBI Caenorhabditis elegans F40G12.9 (F40G12.9) mRNA, complete cds. 11/11 None
F40G12.9 ENSEMBL cdna:known chromosome:CEL140:V:14285069:14285585:1 gene:F40G12.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026735 8/11 Cross Hyb Matching Probes None
GENEFINDER00000026751 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14285068-14285585(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40G12.9
Entrez Gene 185569 Entrez gene
SwissProt Q20251 EMBL-EBI
WormBase CE10192 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01188 Hypothetical protein F40G12.9 [Caenorhabditis elegans] ref|NP_506536.1| F40G12.9 [Caenorhabditis elegans] 2.0E-77
blast AAC69031 Hypothetical protein T19H12.6 [Caenorhabditis elegans] ref|NP_504305.1| T19H12.6 [Caenorhabditis elegans] 5.0E-31
blast CAE72432 Hypothetical protein CBG19599 [Caenorhabditis briggsae] 8.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR007026 EMBL-EBI CC domain 4.9E-14
Pfam IPR007026 EMBL-EBI CC domain 1.5E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506536.1 1 7-29
F40G12.9 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:181349_AT
gtttttccacatatgtttttccatggaatcccaagccttgatgaagaaactactgacagg
gaggtttgagcttgagaatttgaaagttcgaaagttcgatgtaaaaaaaagcaaattacc
catttgtttatttacagaagccgcaaatattgcttgcaaatctgaaaccacaaaagcagt
cgacggagtatgtgctgatggtatgactattattaatggagacaactgttgcagttctga
ggatgtgtctgatgttgatgcacgtgcctgtcgttctgaaccaatgccagctatcggtgg
attatgcccatatggatttatcttggtcgctgatgatggatgttgtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTTCCACATATGTTTTTCCATG 556 449 57 Antisense
TTTTCCATGGAATCCCAAGCCTTGA 58 677 73 Antisense
CTGACAGGGAGGTTTGAGCTTGAGA 262 239 109 Antisense
TATTGCTTGCAAATCTGAAACCACA 521 663 204 Antisense
GTCGACGGAGTATGTGCTGATGGTA 159 475 235 Antisense
GTCTGATGTTGATGCACGTGCCTGT 47 471 303 Antisense
GTGCCTGTCGTTCTGAACCAATGCC 45 479 320 Antisense
GAACCAATGCCAGCTATCGGTGGAT 288 345 334 Antisense
GCTATCGGTGGATTATGCCCATATG 588 303 346 Antisense
CATATGGATTTATCTTGGTCGCTGA 452 213 365 Antisense
TGGTCGCTGATGATGGATGTTGTCC 428 551 380 Antisense
Sequence Source Affymetrix Proprietary Database