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[181348_at]

Description F26A1.1 /REP_DB=WormBase Gene ID /WP=CE27757 /TR=Q19805 /GB=AAA68257.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      6grp_highest_nonorm > 92      6grp_total > 96      4grp_total > 13      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 180.2
(0.5)
P 		168.5
(-0.4)
A 		136.1
(-3)
A 		211.1
(3)
M 		75
B 163.9
(-0.7)
P 		128.5
(-2.9)
A 		126.3
(-3)
A 		224.9
(3)
P 		99
C 174.6
(-0.1)
P 		134.4
(-2.9)
A 		132.6
(-3)
P 		218.1
(3)
P 		86
avr 172.9
(-0.1) 		143.8
(-2.2) 		131.7
(-3) 		218
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 465
1 2 3 4 5 6 range
A 149
(-3)
P 		198.4
(-2)
P 		208.6
(-1.8)
P 		273.5
(-0.5)
P 		394.2
(2)
P 		443.4
(3)
P 		294
B 143.6
(-3)
P 		228.1
(-1.9)
P 		205.8
(-2.2)
P 		277.6
(-1.2)
P 		538.7
(2.2)
P 		601
(3)
P 		457
C 135.7
(-3)
P 		247.3
(-1.6)
P 		200.8
(-2.2)
P 		358.6
(-0.1)
P 		403.3
(0.5)
P 		598.4
(3)
P 		463
avr 142.8
(-3) 		224.6
(-1.8) 		205.1
(-2.1) 		303.2
(-0.6) 		445.4
(1.5) 		547.6
(3) 		405
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 65.6
(3)
P 		36.6
(-2)
A 		35.6
(-2.2)
A 		30.9
(-3)
M 		35
B 52.3
(3)
P 		31.7
(-2.4)
A 		29.3
(-3)
A 		47.9
(1.9)
P 		23
C 57.8
(3)
P 		38.6
(-2.5)
A 		46.2
(-0.3)
P 		36.8
(-3)
P 		21
avr 58.6
(3) 		35.6
(-3) 		37
(-2.6) 		38.5
(-2.2) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 27.5
(-3)
P 		70.6
(-0.2)
P 		45.4
(-1.8)
P 		69.4
(-0.2)
P 		118.9
(3)
P 		108
(2.3)
P 		91
B 50
(-3)
P 		75.9
(-2.1)
P 		50
(-3)
P 		73.5
(-2.2)
P 		218.9
(2.8)
P 		224.1
(3)
P 		174
C 50.3
(-3)
P 		75.5
(-2)
P 		51.1
(-3)
P 		72.1
(-2.1)
P 		130.5
(0.2)
P 		200.3
(3)
P 		150
avr 42.6
(-3) 		74
(-1.6) 		48.8
(-2.7) 		71.7
(-1.7) 		156.1
(2) 		177.5
(3) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181348_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6450
Sequence Type Exemplar sequence
Representative Public ID F26A1.1 NCBI
Target Description F26A1.1 /REP_DB=WormBase Gene ID /WP=CE27757 /TR=Q19805 /GB=AAA68257.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065605(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065605 NCBI Caenorhabditis elegans F26A1.1 (F26A1.1) mRNA, complete cds. 11/11 None
F26A1.1 ENSEMBL cdna:known chromosome:CEL140:III:4850469:4851858:1 gene:F26A1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4850549-4851500(+) 99.75 99.75
Public Domain and Genome References
Gene Title
Ensembl F26A1.1
Entrez Gene 175642 Entrez gene
SwissProt Q19805 EMBL-EBI
WormBase CE27757 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498006 F26A1.1 [Caenorhabditis elegans] gb|AAA68257.2| Hypothetical protein F26A1.1 [Caenorhabditis elegans] 1.0E-157
blast CAE71111 Hypothetical protein CBG17964 [Caenorhabditis briggsae] 4.0E-70
Sequence
Target Sequence 
>C. ELEGANS:181348_AT
ggatcgaattgagtgccatcgcgcgagagccgaactaaaagcaaaaaatgatttcaatac
aagaagtgccgcagatcaagcagaatgcacattgcggttaacggaattgctagacgaatt
cacgaaaaggagtgatgaaatggacaaaacagttttgcatgaatacggagtcatcgatat
tcataaacaacagtcagctccgcctgtgttcgagtccaacaagaaaactctgcgaggacg
tggaggaggacagcttgttgagccagtcacttacttcaattcaaatcagaatactcgaat
acctgaattcaagctgaatttgtctttcgaaaatccgagaattcgacaagagttggatat
tattatgaatcggccgaattcgcgtcgaatcattgtctgttcggtatcgattcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCGAATTGAGTGCCATCGCGCG 406 405 198 Antisense
CCATCGCGCGAGAGCCGAACTAAAA 513 269 213 Antisense
GAAGTGCCGCAGATCAAGCAGAATG 107 337 260 Antisense
GCACATTGCGGTTAACGGAATTGCT 150 317 284 Antisense
CATAAACAACAGTCAGCTCCGCCTG 656 211 379 Antisense
CGCCTGTGTTCGAGTCCAACAAGAA 70 257 398 Antisense
GAGGACAGCTTGTTGAGCCAGTCAC 19 405 443 Antisense
GAGCCAGTCACTTACTTCAATTCAA 36 385 457 Antisense
TATGAATCGGCCGAATTCGCGTCGA 170 655 561 Antisense
ATTCGCGTCGAATCATTGTCTGTTC 431 9 575 Antisense
CATTGTCTGTTCGGTATCGATTCAG 56 217 588 Antisense
Sequence Source Affymetrix Proprietary Database