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[181347_at]

Description F56B6.6 /REP_DB=WormBase Gene ID /WP=CE04666 /TR=Q22996 /GB=AAB04561.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 61.4
(-3)
A 		246.3
(3)
A 		189.8
(1.2)
P 		124.8
(-0.9)
A 		185
B 58.9
(-3)
A 		221.1
(3)
P 		210.2
(2.6)
P 		86.2
(-2)
A 		162
C 48.3
(-3)
A 		241.8
(3)
P 		227.6
(2.6)
P 		100.4
(-1.4)
A 		194
avr 56.2
(-3) 		236.4
(3) 		209.2
(2.1) 		103.8
(-1.4) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 31.1
(-3)
A 		105.8
(1)
M 		143.9
(3)
P 		143.3
(3)
A 		143.5
(3)
A 		87.7
(0)
A 		113
B 44.3
(-3)
A 		145.6
(0.5)
P 		67.1
(-2.2)
A 		85.8
(-1.6)
A 		220.3
(3)
P 		73.4
(-2)
P 		176
C 42.1
(-3)
A 		174.4
(2.4)
P 		103.3
(-0.5)
A 		61.4
(-2.2)
A 		188.5
(3)
P 		101.4
(-0.6)
P 		146
avr 39.2
(-3) 		141.9
(1.3) 		104.8
(-0.3) 		96.8
(-0.6) 		184.1
(3) 		87.5
(-1) 		145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 22.4
(-2.3)
A 		53.5
(3)
A 		49.6
(2.3)
P 		18.3
(-3)
A 		35
B 18.8
(-2.9)
A 		54.6
(3)
P 		48.7
(2)
P 		18.4
(-3)
A 		36
C 16
(-3)
A 		69.5
(2.1)
P 		79.3
(3)
P 		16.9
(-2.9)
A 		63
avr 19.1
(-2.8) 		59.2
(3) 		59.2
(3) 		17.9
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 5.7
(-3)
A 		37.6
(2.1)
M 		31.3
(1.1)
P 		36.3
(1.9)
A 		43.3
(3)
A 		21.3
(-0.5)
A 		38
B 15.4
(-3)
A 		48.5
(-0.3)
P 		16.3
(-2.9)
A 		22.7
(-2.4)
A 		89.5
(3)
P 		27.4
(-2)
P 		74
C 15.6
(-2.6)
A 		53.2
(2)
P 		26.3
(-1.3)
A 		12.3
(-3)
A 		61
(3)
P 		34
(-0.3)
P 		49
avr 12.2
(-3) 		46.4
(0.9) 		24.6
(-1.6) 		23.8
(-1.7) 		64.6
(3) 		27.6
(-1.2) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181347_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18362
Sequence Type Exemplar sequence
Representative Public ID F56B6.6 NCBI
Target Description F56B6.6 /REP_DB=WormBase Gene ID /WP=CE04666 /TR=Q22996 /GB=AAB04561.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076206(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076206 NCBI Caenorhabditis elegans F56B6.6 (F56B6.6) mRNA, complete cds. 11/11 None
SNAP00000023802 ENSEMBL cdna:SNAP chromosome:CEL140:X:3531900:3532779:-1 9/11 None
GENEFINDER00000023817 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3531956:3532779:-1 10/11 None
F56B6.6 ENSEMBL cdna:known chromosome:CEL140:X:3532286:3532779:-1 gene:F56B6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3532286-3532780(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56B6.6
Entrez Gene 186359 Entrez gene
SwissProt Q22996 EMBL-EBI
WormBase CE04666 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04561 Hypothetical protein F56B6.6 [Caenorhabditis elegans] ref|NP_508607.1| F56B6.6 [Caenorhabditis elegans] 2.0E-38
blast CAE68443 Hypothetical protein CBG14231 [Caenorhabditis briggsae] 4.0E-33
blast CAE68443 Hypothetical protein CBG14231 [Caenorhabditis briggsae] 1.0E-22
blast AAB04561 Hypothetical protein F56B6.6 [Caenorhabditis elegans] ref|NP_508607.1| F56B6.6 [Caenorhabditis elegans] 3.0E-22
blast CAE68443 Hypothetical protein CBG14231 [Caenorhabditis briggsae] 2.0E-19
blast AAB04561 Hypothetical protein F56B6.6 [Caenorhabditis elegans] ref|NP_508607.1| F56B6.6 [Caenorhabditis elegans] 3.0E-18
Sequence
Target Sequence 
>C. ELEGANS:181347_AT
tcgaacactttcgacttttcttcttttctccgttcttgttttcaaagcatcatcaggagc
gtgctcttccgattccgactgtggaggagcgccatgtgtgatggatgtgaaggcgggaag
ccatgtctgctgcaagccaaaaccaggaacaactgctcctcagtgccctggtggtatgac
gtattccggtatccctgttctttgtgacccagcagatggagatgacggttgcccagctgg
atcaacttgcagcaccagtacaactgattttaccaaggtgggcaatagggcttttcacca
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAACACTTTCGACTTTTCTTCTT 495 601 18 Antisense
TTTCTCCGTTCTTGTTTTCAAAGCA 534 669 42 Antisense
CATCAGGAGCGTGCTCTTCCGATTC 658 211 68 Antisense
GATTCCGACTGTGGAGGAGCGCCAT 206 433 88 Antisense
GAAGGCGGGAAGCCATGTCTGCTGC 601 331 126 Antisense
AACCAGGAACAACTGCTCCTCAGTG 292 147 158 Antisense
TCCTCAGTGCCCTGGTGGTATGACG 169 591 174 Antisense
TGGTATGACGTATTCCGGTATCCCT 529 551 189 Antisense
GATGGAGATGACGGTTGCCCAGCTG 416 407 232 Antisense
GGATCAACTTGCAGCACCAGTACAA 533 511 256 Antisense
GTGGGCAATAGGGCTTTTCACCAAC 665 487 295 Antisense
Sequence Source Affymetrix Proprietary Database