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[181346_s_at]

Description C18H2.1 /REP_DB=WormBase Gene ID /WP=CE00761 /TR=Q18102 /GB=AAA50664.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 58      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 3
(-3)
A 		27.3
(3)
A 		7.6
(-1.9)
A 		5.7
(-2.3)
A 		24
B 4.9
(-3)
A 		8
(-2.1)
A 		25
(3)
A 		10.4
(-1.4)
A 		20
C 34.4
(2.8)
A 		29.8
(1.9)
A 		35.7
(3)
A 		4.1
(-3)
A 		32
avr 14.1
(-0.2) 		21.7
(2.6) 		22.8
(3) 		6.7
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 21.2
(0.7)
A 		21.3
(0.8)
A 		32.6
(3)
A 		2.4
(-3)
A 		4.4
(-2.6)
A 		5.2
(-2.4)
A 		30
B 28.3
(1)
A 		15.8
(-1.1)
A 		40.4
(3)
A 		4.4
(-3)
A 		24.2
(0.3)
A 		5.7
(-2.8)
A 		36
C 17.8
(3)
A 		4.7
(-2.4)
A 		4.6
(-2.5)
A 		16.3
(2.4)
A 		3.3
(-3)
A 		4.5
(-2.5)
A 		15
avr 22.4
(2) 		13.9
(-0.5) 		25.9
(3) 		7.7
(-2.3) 		10.6
(-1.4) 		5.1
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.1
(-2.6)
A 		5.9
(3)
A 		2
(-1.6)
A 		0.8
(-3)
A 		5
B 1.6
(-3)
A 		2
(-2.4)
A 		5.8
(3)
A 		2.2
(-2.1)
A 		4
C 11.4
(2.5)
A 		8.6
(1.1)
A 		12.4
(3)
A 		0.7
(-3)
A 		12
avr 4.7
(0.8) 		5.5
(1.7) 		6.7
(3) 		1.2
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.9
(-0.2)
A 		7.6
(3)
A 		7.1
(2.6)
A 		0.6
(-3)
A 		1.3
(-2.4)
A 		1.3
(-2.4)
A 		7
B 9.8
(3)
A 		5.2
(-0.2)
A 		9.8
(3)
A 		1.2
(-3)
A 		9.8
(3)
A 		2.1
(-2.4)
A 		9
C 6.6
(3)
A 		1.4
(-2.7)
A 		1.2
(-2.9)
A 		3.3
(-0.6)
A 		1.1
(-3)
A 		1.5
(-2.6)
A 		6
avr 6.8
(3) 		4.7
(0.6) 		6
(2.1) 		1.7
(-2.9) 		4.1
(-0.1) 		1.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181346_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6308
Sequence Type Exemplar sequence
Representative Public ID C18H2.1 NCBI
Target Description C18H2.1 /REP_DB=WormBase Gene ID /WP=CE00761 /TR=Q18102 /GB=AAA50664.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066273 NCBI Caenorhabditis elegans C18H2.1 (C18H2.1) mRNA, complete cds. 11/11 None
SNAP00000004535 ENSEMBL cdna:SNAP chromosome:CEL140:III:7670804:7672076:1 9/11 None
C18H2.1 ENSEMBL cdna:known chromosome:CEL140:III:7661227:7672076:1 gene:C18H2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004533 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004549 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7661224-7672074(+) 96.59 100.0
Public Domain and Genome References
Gene Title
Ensembl C18H2.1
Entrez Gene 176079 Entrez gene
SwissProt Q18102 EMBL-EBI
WormBase CE29670 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA50664 Hypothetical protein C18H2.1 [Caenorhabditis elegans] ref|NP_498674.2| C18H2.1 [Caenorhabditis elegans] 0.0
blast AAA50632 Hypothetical protein F37A4.4 [Caenorhabditis elegans] ref|NP_498471.1| F37A4.4 [Caenorhabditis elegans] sp|P41882|YPT4_CAEEL Hypothetical protein F37A4.4 in chromosome III 1.0E-179
blast T15566 hypothetical protein C18H2.3 - Caenorhabditis elegans 1.0E-174
blast AAA50664 Hypothetical protein C18H2.1 [Caenorhabditis elegans] ref|NP_498674.2| C18H2.1 [Caenorhabditis elegans] 3.0E-42
blast AAC26301 Hypothetical protein Y57G7A.8 [Caenorhabditis elegans] ref|NP_493941.1| Y57G7A.8 [Caenorhabditis elegans] 4.0E-20
blast CAE46681 Hypothetical protein Y38H8A.7 [Caenorhabditis elegans] ref|NP_001023458.1| Y38H8A.7 [Caenorhabditis elegans] 8.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.1E-25
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.2E-27
Pfam IPR001357 EMBL-EBI BRCT 1.6E-4
Pfam IPR001357 EMBL-EBI BRCT 2.9
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498674.2 3 21-43,960-982,1251-1273
C18H2.1 3 21-43,960-982,1251-1273
Sequence
Target Sequence 
>C. ELEGANS:181346_S_AT
ggaagattaccaacatgagccagtcaagcgccgctccaaaccacgcaggtgactgcccac
cacgcaggcaacgcgtcaagaccacgcaggcaaccaaaaagcacgcagacggatcaattg
atgatactattgaagatgatgtagtatctccacttttgccggacagaaattacacatatg
caaataccgacaatgacagcatcaaatcagatgaacggtggtcagctctcacagaaaatt
atcttcataaaatggacttcctacttcattctacacaatccaaaacagcaattaacgcaa
atttctcggctcacgatatttcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGATTACCAACATGAGCCAGTC 655 529 4478 Antisense
TACCAACATGAGCCAGTCAAGCGCC 620 649 4485 Antisense
GATGATGTAGTATCTCCACTTTTGC 88 411 4612 Antisense
TATCTCCACTTTTGCCGGACAGAAA 567 659 4622 Antisense
GCCGGACAGAAATTACACATATGCA 541 283 4635 Antisense
GCAAATACCGACAATGACAGCATCA 699 317 4657 Antisense
AACGGTGGTCAGCTCTCACAGAAAA 133 141 4691 Antisense
TCATAAAATGGACTTCCTACTTCAT 528 619 4722 Antisense
TCCTACTTCATTCTACACAATCCAA 185 593 4736 Antisense
AATTAACGCAAATTTCTCGGCTCAC 231 173 4767 Antisense
ATTTCTCGGCTCACGATATTTCGAA 179 17 4778 Antisense
Sequence Source Affymetrix Proprietary Database