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[181345_at]

Description T04B8.1 /REP_DB=WormBase Gene ID /WP=CE18189 /TR=O44849 /GB=AAB95007.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 7.6
(-2.2)
A 		6
(-2.4)
A 		2.6
(-3)
A 		38.7
(3)
A 		36
B 9.6
(2.7)
A 		9.9
(3)
A 		4.1
(-3)
A 		6.6
(-0.4)
A 		6
C 8.6
(-2.6)
A 		16.4
(-1.6)
A 		5.6
(-3)
A 		51.3
(3)
A 		46
avr 8.6
(-2) 		10.8
(-1.6) 		4.1
(-3) 		32.2
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 6.9
(-2.7)
A 		7.6
(-2.6)
A 		56
(3)
A 		4
(-3)
A 		26.1
(-0.5)
A 		25.9
(-0.5)
A 		52
B 9
(-1.6)
A 		20.3
(0.6)
A 		25
(1.5)
A 		31.9
(2.8)
A 		32.9
(3)
A 		1.7
(-3)
A 		31
C 2.9
(-3)
A 		9.8
(-2.3)
A 		3.6
(-2.9)
A 		66.6
(3)
A 		2.8
(-3)
A 		5.8
(-2.7)
A 		64
avr 6.3
(-3) 		12.6
(-1.6) 		28.2
(1.7) 		34.2
(3) 		20.6
(0.1) 		11.1
(-2) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.8
(-0.5)
A 		1.3
(-2.3)
A 		0.7
(-3)
A 		5.7
(3)
A 		5
B 3.1
(3)
A 		2.5
(1.4)
A 		0.9
(-3)
A 		1.4
(-1.6)
A 		2
C 2.9
(-2.1)
A 		4.7
(-0.5)
A 		1.9
(-3)
A 		8.7
(3)
A 		7
avr 2.9
(-0.5) 		2.8
(-0.7) 		1.2
(-3) 		5.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.3
(-2.8)
A 		2.7
(-2.1)
A 		12.2
(3)
A 		1
(-3)
A 		7.9
(0.7)
A 		6.3
(-0.2)
A 		11
B 3.1
(-1.8)
A 		6.8
(-0.1)
A 		6.1
(-0.4)
A 		8.5
(0.7)
A 		13.4
(3)
A 		0.6
(-3)
A 		13
C 1.1
(-2.9)
A 		3
(-2)
A 		0.9
(-3)
A 		13.4
(3)
A 		0.9
(-3)
A 		1.9
(-2.5)
A 		13
avr 1.8
(-3) 		4.2
(-0.5) 		6.4
(1.8) 		7.6
(3) 		7.4
(2.8) 		2.9
(-1.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181345_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4775
Sequence Type Exemplar sequence
Representative Public ID T04B8.1 NCBI
Target Description T04B8.1 /REP_DB=WormBase Gene ID /WP=CE18189 /TR=O44849 /GB=AAB95007.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061375(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061375 NCBI Caenorhabditis elegans T04B8.1 (T04B8.1) mRNA, complete cds. 10/11 None
T04B8.1 ENSEMBL cdna:known chromosome:CEL140:II:634290:637613:1 gene:T04B8.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021879 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021884 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:634289-637613(+) 96.51 100.0
Public Domain and Genome References
Gene Title
Ensembl T04B8.1
Entrez Gene 188052 Entrez gene
SwissProt O44849 EMBL-EBI
WormBase CE36889 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95007 Hypothetical protein T04B8.1 [Caenorhabditis elegans] ref|NP_493776.2| T04B8.1 [Caenorhabditis elegans] 1.0E-172
blast AAC78183 Hypothetical protein F46F5.1 [Caenorhabditis elegans] ref|NP_493811.1| F46F5.1 [Caenorhabditis elegans] 5.0E-47
Sequence
Target Sequence 
>C. ELEGANS:181345_AT
caatgttccattgtcgtatgtcaaggatagcacggtttacagaaaaataaatgaaaagga
gatgtcagctatttcaaaaggatttcttaaagcaattggagattccgaatcgatgcttgt
taataaaataaattctgatccacgaatgggagatgacaagtacacagttgtatcgtttaa
agcagaaattgaagaagcatttaagaattcccgaaaacaaaagttcttttacaataccgg
accggacacttccacaagtattaatcaattgacaatctacgcaggagagcatcgtgttgg
tttgaaaaaatgtattatgtttgaaaatgggcgtcaggttccgaacacaagcactggggg
tggttctcaaaaacttaacgttctcaaacaaattaacaaaacattaaaatttttatttaa
atttaaaacaactattcgggattcctggccttcttataatccaccatcatttgcttcatt
ttccgcagctccacgagccaaatatcattgtactccttcactgaatcagcggccagaaga
tccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGTTCCATTGTCGTATGTCAAG 613 181 522 Antisense
GATTCCGAATCGATGCTTGTTAATA 380 433 622 Antisense
CAATACCGGACCGGACACTTCCACA 558 179 753 Antisense
GAAAATGGGCGTCAGGTTCCGAACA 227 251 844 Antisense
GGTTCCGAACACAAGCACTGGGGGT 224 507 858 Antisense
ACAACTATTCGGGATTCCTGGCCTT 315 113 949 Antisense
TTCCTGGCCTTCTTATAATCCACCA 171 699 963 Antisense
TAATCCACCATCATTTGCTTCATTT 17 637 978 Antisense
TTCCGCAGCTCCACGAGCCAAATAT 164 699 1002 Antisense
ATATCATTGTACTCCTTCACTGAAT 611 19 1023 Antisense
GAATCAGCGGCCAGAAGATCCACAA 226 327 1044 Antisense
Sequence Source Affymetrix Proprietary Database