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[181343_at]

Description C17F4.3 /REP_DB=WormBase Gene ID /WP=CE08276 /TR=O16540 /GB=AAK31436.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 11.4
(-3)
A 		134.4
(2.4)
A 		147
(3)
A 		25.7
(-2.4)
A 		136
B 52.9
(-1.2)
A 		136.7
(3)
A 		114.1
(1.9)
A 		16.1
(-3)
A 		121
C 35.3
(-2)
A 		134.5
(3)
A 		126.5
(2.6)
A 		15.5
(-3)
A 		119
avr 33.2
(-2.3) 		135.2
(3) 		129.2
(2.7) 		19.1
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 31.4
(-3)
A 		267.4
(3)
P 		222.1
(1.8)
P 		178.1
(0.7)
A 		115.3
(-0.9)
A 		65.2
(-2.1)
A 		236
B 13.9
(-3)
A 		216
(2.5)
P 		172.8
(1.3)
A 		169.7
(1.2)
P 		235.3
(3)
P 		76.3
(-1.3)
A 		221
C 16.1
(-3)
A 		212.5
(3)
P 		110.8
(-0.1)
A 		167.5
(1.6)
A 		205.2
(2.8)
P 		86.6
(-0.8)
P 		196
avr 20.5
(-3) 		232
(3) 		168.6
(1.2) 		171.8
(1.3) 		185.3
(1.7) 		76
(-1.4) 		212
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 4.2
(-2.9)
A 		29.2
(1.4)
A 		38.4
(3)
A 		3.8
(-3)
A 		35
B 16.9
(-0.3)
A 		33.8
(3)
A 		26.4
(1.5)
A 		3.4
(-3)
A 		30
C 11.7
(-1.7)
A 		38.7
(2.2)
A 		44.1
(3)
A 		2.6
(-3)
A 		42
avr 10.9
(-1.6) 		33.9
(2.6) 		36.3
(3) 		3.3
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 5.8
(-3)
A 		95.1
(3)
P 		48.4
(-0.1)
P 		45.2
(-0.4)
A 		34.8
(-1.1)
A 		15.9
(-2.3)
A 		89
B 4.8
(-3)
A 		71.9
(1.4)
P 		42
(-0.5)
A 		44.9
(-0.4)
P 		95.6
(3)
P 		28.4
(-1.4)
A 		91
C 5.9
(-3)
A 		64.8
(2.8)
P 		28.2
(-0.8)
A 		33.7
(-0.2)
A 		66.4
(3)
P 		29
(-0.7)
P 		61
avr 5.5
(-3) 		77.3
(3) 		39.5
(-0.2) 		41.3
(-0) 		65.6
(2) 		24.4
(-1.4) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181343_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5317
Sequence Type Exemplar sequence
Representative Public ID C17F4.3 NCBI
Target Description C17F4.3 /REP_DB=WormBase Gene ID /WP=CE08276 /TR=O16540 /GB=AAK31436.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062085(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062085 NCBI Caenorhabditis elegans C17F4.3 (C17F4.3) mRNA, complete cds. 11/11 None
SNAP00000021555 ENSEMBL cdna:SNAP chromosome:CEL140:II:3240543:3241667:1 11/11 None
GENEFINDER00000021580 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3240543:3241667:1 11/11 None
C17F4.3 ENSEMBL cdna:known chromosome:CEL140:II:3240540:3241722:1 gene:C17F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3240541-3241666(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17F4.3
Entrez Gene 173667 Entrez gene
SwissProt O16540 EMBL-EBI
WormBase CE08276 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31436 Hypothetical protein C17F4.3 [Caenorhabditis elegans] ref|NP_494486.1| C17F4.3 [Caenorhabditis elegans] 1.0E-143
blast AAK31436 Hypothetical protein C17F4.3 [Caenorhabditis elegans] ref|NP_494486.1| C17F4.3 [Caenorhabditis elegans] 1.0E-135
blast CAE59998 Hypothetical protein CBG03492 [Caenorhabditis briggsae] 1.0E-122
blast CAB05632 Hypothetical protein T23F6.2 [Caenorhabditis elegans] ref|NP_502430.1| T23F6.2 [Caenorhabditis elegans] 1.0E-121
blast CAE59998 Hypothetical protein CBG03492 [Caenorhabditis briggsae] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:181343_AT
tgattttactggacgatccgccttcaacccattcacccatatggtgtccgcagtgtacgc
cgaggatttgtccgatggttggggagctggtatggctgttaacggagtcaatggtcacgg
attgaacgtccgcaagaactttgactcctatgcagatgtgcctttaaatctgaacgacgg
gatgtaccagccgttcatcgctgcggccaccgtcggtggggaatacgatctttcaaaaat
gcgtgaagtttccggatccttggatctcccgattcctggggtcaatgagttgttcgattt
gaacgcaaggatcttggttaagacatttttgttgcacaattctgcaattgaatttccact
cacgctgtcggatcctaacgaaagagcgccctacaatttccggtacgctgtgtgggctcc
ggatcgtcatatggcttatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATTTTACTGGACGATCCGCCTTC 494 563 249 Antisense
ACCCATTCACCCATATGGTGTCCGC 587 89 275 Antisense
GCAGTGTACGCCGAGGATTTGTCCG 502 311 298 Antisense
GAACGTCCGCAAGAACTTTGACTCC 696 345 372 Antisense
ACTTTGACTCCTATGCAGATGTGCC 169 103 386 Antisense
AATGCGTGAAGTTTCCGGATCCTTG 431 165 486 Antisense
ATCTCCCGATTCCTGGGGTCAATGA 616 31 512 Antisense
GCAATTGAATTTCCACTCACGCTGT 223 323 592 Antisense
CTCACGCTGTCGGATCCTAACGAAA 476 227 607 Antisense
CGAAAGAGCGCCCTACAATTTCCGG 358 251 627 Antisense
GCTCCGGATCGTCATATGGCTTATG 339 299 664 Antisense
Sequence Source Affymetrix Proprietary Database