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[181342_at]

Description F27B3.6 /REP_DB=WormBase Gene ID /WP=CE24925 /TR=Q9N5U9 /GB=AAF39792.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 4.1
(-3)
A 		9.4
(-0.3)
A 		11
(0.5)
A 		15.9
(3)
A 		12
B 33.8
(0.2)
A 		10.7
(-3)
A 		51.6
(2.6)
A 		54.3
(3)
A 		44
C 52.5
(-1)
A 		35.3
(-3)
A 		56.2
(-0.6)
A 		87.7
(3)
A 		52
avr 30.1
(-1) 		18.5
(-3) 		39.6
(0.7) 		52.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 69.2
(1.8)
A 		34.6
(-0.8)
A 		8.2
(-2.8)
A 		5.7
(-3)
A 		35
(-0.8)
A 		85.2
(3)
A 		80
B 4.6
(-3)
A 		7.5
(-2.6)
A 		7.4
(-2.7)
A 		44.4
(1.8)
A 		53.9
(3)
A 		27.4
(-0.2)
A 		49
C 31.6
(-0.3)
A 		57.3
(3)
A 		34.7
(0.1)
A 		10.8
(-3)
A 		48.8
(1.9)
A 		38
(0.5)
A 		47
avr 35.1
(0.3) 		33.1
(-0.1) 		16.8
(-3) 		20.3
(-2.4) 		45.9
(2.2) 		50.2
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.5
(-3)
A 		2
(-0.9)
A 		2.9
(3)
A 		2.3
(0.4)
A 		1
B 10.8
(2.2)
A 		2.6
(-3)
A 		12
(3)
A 		11.6
(2.7)
A 		9
C 17.4
(1.6)
A 		10.2
(-3)
A 		19.6
(3)
A 		14.8
(-0.1)
A 		9
avr 9.9
(1.5) 		4.9
(-3) 		11.5
(3) 		9.6
(1.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12.8
(0.5)
A 		12.3
(0.4)
A 		1.8
(-2.9)
A 		1.5
(-3)
A 		10.5
(-0.2)
A 		20.8
(3)
A 		19
B 1.6
(-3)
A 		2.5
(-2.7)
A 		1.8
(-2.9)
A 		11.8
(0)
A 		21.9
(3)
A 		10.2
(-0.5)
A 		20
C 11.7
(0.7)
A 		17.5
(3)
A 		8.8
(-0.4)
A 		2.2
(-3)
A 		15.8
(2.3)
A 		12.7
(1.1)
A 		15
avr 8.7
(-0.7) 		10.8
(0.4) 		4.1
(-3) 		5.2
(-2.5) 		16.1
(3) 		14.6
(2.3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6805
Sequence Type Exemplar sequence
Representative Public ID F27B3.6 NCBI
Target Description F27B3.6 /REP_DB=WormBase Gene ID /WP=CE24925 /TR=Q9N5U9 /GB=AAF39792.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066050 NCBI Caenorhabditis elegans F27B3.6 (F27B3.6) mRNA, complete cds. 11/11 None
SNAP00000034657 ENSEMBL cdna:SNAP chromosome:CEL140:III:6577828:6578510:-1 11/11 None
GENEFINDER00000034664 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6577828:6578510:-1 11/11 None
F27B3.6 ENSEMBL cdna:known chromosome:CEL140:III:6577828:6578519:-1 gene:F27B3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6577826-6578518(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27B3.6
Entrez Gene 185006 Entrez gene
SwissProt Q9N5U9 EMBL-EBI
WormBase CE24925 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39792 Hypothetical protein F27B3.6 [Caenorhabditis elegans] ref|NP_498451.1| F27B3.6 [Caenorhabditis elegans] 1.0E-100
blast AAF39792 Hypothetical protein F27B3.6 [Caenorhabditis elegans] ref|NP_498451.1| F27B3.6 [Caenorhabditis elegans] 1.0E-98
Sequence
Target Sequence 
>C. ELEGANS:181342_AT
gattcgtactgaagatcctatggaagttttcaaagctgttgaagggctcttagagatgga
aattccattcaagtatttcgaaagatacaatttgaaggacctgattctgtccaaagttct
aaagagcattggcggcttgcttatcagaaggctccaagttacactagaggagaaggattt
tgaggacaagtttcaaaaagaggatccagaatctcttgaggacggtgaaatggaagaaat
ccagatgttaatgatgacaccaacaaaaaacgatttcatgagagctcaacaacaactgga
tgaatgcggatacaaggatcttccagaagatattcaagaatctcacgagttcacccgtgc
actaacggtgattgatgcctaccgctgcggccatgagactccggagccaaccactgagtt
cttcaaaatcgacacttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCGTACTGAAGATCCTATGGAA 623 431 54 Antisense
ACCTGATTCTGTCCAAAGTTCTAAA 546 87 152 Antisense
GTTCTAAAGAGCATTGGCGGCTTGC 237 443 169 Antisense
TGGCGGCTTGCTTATCAGAAGGCTC 489 541 183 Antisense
TCAGAAGGCTCCAAGTTACACTAGA 416 621 197 Antisense
AATGCGGATACAAGGATCTTCCAGA 52 167 356 Antisense
TCAAGAATCTCACGAGTTCACCCGT 666 631 387 Antisense
ACGAGTTCACCCGTGCACTAACGGT 447 89 398 Antisense
AACGGTGATTGATGCCTACCGCTGC 623 143 417 Antisense
GAGCCAACCACTGAGTTCTTCAAAA 51 385 457 Antisense
GAGTTCTTCAAAATCGACACTTCTG 5 399 469 Antisense
Sequence Source Affymetrix Proprietary Database