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[181341_at] transposase

Description F14D2.5 /REP_DB=WormBase Gene ID /WP=CE16980 /TR=O44802 /GB=AAB94959.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 7.2
(-1.7)
A 		25.8
(3)
A 		2.1
(-3)
A 		11.1
(-0.7)
A 		24
B 8.6
(3)
A 		4.1
(-3)
A 		4.7
(-2.2)
A 		7.5
(1.5)
A 		5
C 18.4
(-1.1)
A 		17.6
(-1.2)
A 		2.6
(-3)
A 		51.3
(3)
A 		49
avr 11.4
(-0.5) 		15.8
(0.8) 		3.1
(-3) 		23.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.3
(3)
A 		5.9
(-1.2)
A 		4
(-3)
A 		8.8
(1.6)
A 		9.8
(2.5)
A 		8.3
(1.1)
A 		6
B 8.2
(-1.3)
A 		5.6
(-2.1)
A 		11.7
(-0.3)
A 		2.6
(-3)
A 		11.2
(-0.4)
A 		22.7
(3)
A 		20
C 3.9
(-3)
A 		24.8
(3)
A 		12.8
(-0.4)
A 		18.9
(1.3)
A 		9.4
(-1.4)
A 		8.5
(-1.7)
A 		21
avr 7.5
(-3) 		12.1
(1.8) 		9.5
(-0.9) 		10.1
(-0.3) 		10.1
(-0.3) 		13.2
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.6
(-0.6)
A 		5.6
(3)
A 		0.6
(-3)
A 		1.6
(-1.8)
A 		5
B 2.7
(3)
A 		1
(-3)
A 		1.1
(-2.6)
A 		1.6
(-0.9)
A 		2
C 6.1
(1.1)
A 		5.1
(0.3)
A 		0.9
(-3)
A 		8.6
(3)
A 		8
avr 3.8
(2.8) 		3.9
(3) 		0.9
(-3) 		3.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.9
(-0)
A 		2.1
(0.6)
A 		0.9
(-3)
A 		2.2
(0.9)
A 		2.9
(3)
A 		2
(0.3)
A 		2
B 2.8
(-1.4)
A 		1.9
(-2.1)
A 		2.8
(-1.4)
A 		0.7
(-3)
A 		4.6
(-0)
A 		8.5
(3)
A 		8
C 1.5
(-3)
A 		7.6
(3)
A 		3.2
(-1.3)
A 		3.8
(-0.7)
A 		3
(-1.5)
A 		2.8
(-1.7)
A 		6
avr 2.1
(-3) 		3.9
(1.7) 		2.3
(-2.5) 		2.2
(-2.7) 		3.5
(0.7) 		4.4
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181341_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4354
Sequence Type Exemplar sequence
Representative Public ID F14D2.5 NCBI
Target Description F14D2.5 /REP_DB=WormBase Gene ID /WP=CE16980 /TR=O44802 /GB=AAB94959.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062109 NCBI Caenorhabditis elegans F14D2.5 (transposase) mRNA, complete cds. 11/11 None
F14D2.5 ENSEMBL cdna:known chromosome:CEL140:II:3340384:3341209:1 gene:F14D2.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037083 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3340382-3341208(+) 100.0 100.0
Public Domain and Genome References
Gene Title transposase
Ensembl F14D2.5
Entrez Gene 184456 Entrez gene
SwissProt O44802 EMBL-EBI
WormBase CE16980 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494510 F14D2.5 [Caenorhabditis elegans] gb|AAB94959.1| Hypothetical protein F14D2.5 [Caenorhabditis elegans] 5.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494510.1 1 4-26
F14D2.5 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:181341_AT
gttttgccgcattagcttttttccagaattttgctaatttatttagtttatttgtgcctc
tcaacttggtgttcaccatgtttgaaactgcccagaagcgaagagatcggagaaatgccg
cacatatgaacgaggtgatgaggcaaagaaggctggatagagaagcggctgcacgtcaag
ggcttccactggtaactccagcaccggtgccagtggctccagctccgatcgctcctcgct
cgccaatcttgacgcgctcgcgcacccgtcaactcgctgaagctcgtcaagctgctgaag
tcgacgtgaagccggtcctgctccacaaaagagagcctcgcgatgatggtggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTGCCGCATTAGCTTTTTTCCA 172 449 17 Antisense
TTATTTAGTTTATTTGTGCCTCTCA 432 679 55 Antisense
TTGTGCCTCTCAACTTGGTGTTCAC 288 707 68 Antisense
GTGTTCACCATGTTTGAAACTGCCC 591 485 85 Antisense
GAAACTGCCCAGAAGCGAAGAGATC 557 357 100 Antisense
GAAATGCCGCACATATGAACGAGGT 48 363 128 Antisense
GAAGCGGCTGCACGTCAAGGGCTTC 438 343 178 Antisense
TCAAGGGCTTCCACTGGTAACTCCA 390 629 192 Antisense
TGAAGTCGACGTGAAGCCGGTCCTG 302 571 312 Antisense
GGTCCTGCTCCACAAAAGAGAGCCT 433 501 330 Antisense
AAGAGAGCCTCGCGATGATGGTGGT 310 153 345 Antisense
Sequence Source Affymetrix Proprietary Database