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[181337_at]

Description T22D1.6 /REP_DB=WormBase Gene ID /WP=CE17250 /TR=Q9GZH8 /GB=AAF98628.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 46      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 76.3
(3)
A 		62.4
(1.7)
A 		67.7
(2.2)
A 		10.1
(-3)
A 		66
B 87.6
(3)
A 		36.5
(-3)
A 		41.2
(-2.4)
A 		50.7
(-1.3)
A 		51
C 32
(-3)
A 		67.7
(0.4)
A 		41.1
(-2.1)
A 		95.8
(3)
A 		64
avr 65.3
(3) 		55.5
(-0.8) 		50
(-3) 		52.2
(-2.1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 57.3
(0.4)
A 		31.7
(-1.2)
A 		85.9
(2.1)
A 		58.8
(0.5)
A 		99.6
(3)
A 		3.4
(-3)
A 		96
B 23.6
(-3)
A 		30.5
(-2.3)
A 		34
(-2)
A 		84.6
(3)
A 		38.6
(-1.5)
A 		30.9
(-2.3)
A 		61
C 28.7
(-1.9)
A 		136.2
(3)
A 		46.8
(-1.1)
A 		33.8
(-1.7)
A 		22.2
(-2.2)
A 		4.2
(-3)
A 		132
avr 36.5
(-0.3) 		66.1
(3) 		55.6
(1.8) 		59.1
(2.2) 		53.5
(1.6) 		12.8
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 27.8
(3)
A 		13.5
(-0.3)
A 		17.7
(0.7)
A 		1.5
(-3)
A 		26
B 27.9
(3)
A 		9
(-3)
A 		9.5
(-2.8)
A 		10.8
(-2.4)
A 		19
C 10.6
(-3)
A 		19.5
(3)
A 		14.3
(-0.5)
A 		16.2
(0.8)
A 		9
avr 22.1
(3) 		14
(-0.9) 		13.8
(-1) 		9.5
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 10.6
(-1)
A 		11.3
(-0.8)
A 		18.7
(0.7)
A 		14.9
(-0.1)
A 		30.1
(3)
A 		0.8
(-3)
A 		29
B 8.2
(-3)
A 		10.2
(-2.2)
A 		8.3
(-3)
A 		22.4
(3)
A 		15.7
(0.2)
A 		11.5
(-1.6)
A 		14
C 10.6
(-1.6)
A 		41.6
(3)
A 		11.9
(-1.4)
A 		6.8
(-2.2)
A 		7.2
(-2.1)
A 		1.4
(-3)
A 		40
avr 9.8
(-1.1) 		21
(3) 		13
(0.1) 		14.7
(0.7) 		17.7
(1.8) 		4.6
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181337_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9149
Sequence Type Exemplar sequence
Representative Public ID T22D1.6 NCBI
Target Description T22D1.6 /REP_DB=WormBase Gene ID /WP=CE17250 /TR=Q9GZH8 /GB=AAF98628.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068660
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068660 NCBI Caenorhabditis elegans T22D1.6 (T22D1.6) mRNA, complete cds. None
T22D1.6 ENSEMBL cdna:known chromosome:CEL140:IV:6899503:6900040:1 gene:T22D1.6 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6899508-6900046(+) 70.97 100.0
Public Domain and Genome References
Gene Title
Ensembl T22D1.6
Entrez Gene 188740 Entrez gene
SwissProt Q9GZH8 EMBL-EBI
WormBase CE32499 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98628 Hypothetical protein T22D1.6 [Caenorhabditis elegans] ref|NP_501061.2| T22D1.6 [Caenorhabditis elegans] 6.0E-45
blast T32704 hypothetical protein T22D1.6 - Caenorhabditis elegans 2.0E-39
blast AAV28333 Hypothetical protein T05A12.4a [Caenorhabditis elegans] ref|NP_001023359.1| T05A12.4a [Caenorhabditis elegans] 6.0E-21
Sequence
Target Sequence 
>C. ELEGANS:181337_AT
gtggaatttatatcgatgttttggaacttatagcaacaattacagtactctttaaagacg
cacaacttttcgcatttaagccaaattcgtcgtgtcgagaccagctaccttttttttttt
gcaaaatcgcatcgtctcttagcaaattcaaaaagtactacgaagctcagattaaagttg
ttattgaatccgttagtaacgacgttaaagaacttcgttatcttatgaatttgatgaaga
aacaattggacggagaaaccgaagatgcttccgactgtcttatctgttgcgaatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAATTTATATCGATGTTTTGGA 234 491 53 Antisense
TTATAGCAACAATTACAGTACTCTT 129 679 80 Antisense
AAGACGCACAACTTTTCGCATTTAA 643 153 107 Antisense
ACAACTTTTCGCATTTAAGCCAAAT 532 99 114 Antisense
AAGCCAAATTCGTCGTGTCGAGACC 90 149 130 Antisense
GCAAAATCGCATCGTCTCTTAGCAA 401 319 173 Antisense
TCGCATCGTCTCTTAGCAAATTCAA 623 599 179 Antisense
AAAAAGTACTACGAAGCTCAGATTA 469 129 202 Antisense
GAAACCGAAGATGCTTCCGACTGTC 611 357 307 Antisense
TGCTTCCGACTGTCTTATCTGTTGC 597 579 318 Antisense
GACTGTCTTATCTGTTGCGAATCAA 99 375 325 Antisense
Sequence Source Affymetrix Proprietary Database