[Home] | [Total List]

[181336_at]

Description F23F1.3 /REP_DB=WormBase Gene ID /WP=CE09603 /TR=O17067 /GB=AAB70322.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 50      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 61      6grp_total > 50      4grp_total > 13      6grp_highest_sub > 03      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 397
1 2 3 4 range
A 403.4
(-0.2)
P 		274.9
(-2.9)
P 		268.4
(-3)
P 		559.2
(3)
P 		291
B 454.2
(1.5)
P 		224.3
(-3)
P 		243.7
(-2.6)
P 		528.3
(3)
P 		304
C 456.2
(0.4)
P 		353.6
(-1.2)
P 		237.7
(-3)
P 		621.3
(3)
P 		384
avr 437.9
(0.5) 		284.3
(-2.4) 		249.9
(-3) 		569.6
(3) 		320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 445.1
(0.9)
P 		301.9
(-2.6)
P 		530.9
(3)
P 		531.6
(3)
P 		306
(-2.5)
P 		286.6
(-3)
P 		245
B 471.6
(2.7)
P 		384.7
(-0.6)
P 		478.2
(3)
P 		384.2
(-0.6)
P 		331.6
(-2.7)
P 		322.7
(-3)
P 		156
C 332.7
(-1.9)
P 		438.9
(0.6)
P 		480.4
(1.6)
P 		539.2
(3)
P 		288.8
(-3)
P 		352.2
(-1.5)
P 		250
avr 416.5
(0.4) 		375.2
(-0.9) 		496.5
(3) 		485
(2.6) 		308.8
(-3) 		320.5
(-2.6) 		188
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 146.9
(3)
P 		59.7
(-3)
P 		70.2
(-2.3)
P 		81.9
(-1.5)
P 		87
B 144.8
(3)
P 		55.4
(-3)
P 		56.5
(-2.9)
P 		112.6
(0.8)
P 		89
C 151
(3)
P 		101.7
(-1.3)
P 		82.9
(-3)
P 		104.8
(-1.1)
P 		68
avr 147.6
(3) 		72.3
(-2.8) 		69.9
(-3) 		99.8
(-0.7) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 82.1
(-1.9)
P 		107.4
(0.5)
P 		115.6
(1.2)
P 		134.8
(3)
P 		92.3
(-0.9)
P 		69.8
(-3)
P 		65
B 164.1
(3)
P 		128.1
(-0.5)
P 		116.1
(-1.6)
P 		101.8
(-3)
P 		134.7
(0.2)
P 		120.3
(-1.2)
P 		62
C 123.3
(1.4)
P 		133.9
(3)
P 		122.3
(1.3)
P 		108.4
(-0.8)
P 		93.4
(-3)
P 		117.9
(0.6)
P 		41
avr 123.2
(3) 		123.1
(3) 		118
(1.5) 		115
(0.6) 		106.8
(-1.8) 		102.7
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181336_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4976
Sequence Type Exemplar sequence
Representative Public ID F23F1.3 NCBI
Target Description F23F1.3 /REP_DB=WormBase Gene ID /WP=CE09603 /TR=O17067 /GB=AAB70322.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061239 NCBI Caenorhabditis elegans F23F1.3 (F23F1.3) mRNA, complete cds. 11/11 None
SNAP00000004422 ENSEMBL cdna:SNAP chromosome:CEL140:II:31825:33559:1 11/11 None
GENEFINDER00000004433 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:31825:33559:1 11/11 None
F23F1.3 ENSEMBL cdna:known chromosome:CEL140:II:31825:33604:1 gene:F23F1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:31824-33559(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23F1.3
Entrez Gene 184901 Entrez gene
SwissProt O17067 EMBL-EBI
WormBase CE31795 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70322 Hypothetical protein F23F1.3 [Caenorhabditis elegans] ref|NP_493640.2| F23F1.3 [Caenorhabditis elegans] 1.0E-174
blast AAB70322 Hypothetical protein F23F1.3 [Caenorhabditis elegans] ref|NP_493640.2| F23F1.3 [Caenorhabditis elegans] 1.0E-163
blast CAE62830 Hypothetical protein CBG07009 [Caenorhabditis briggsae] 3.0E-65
blast CAE62830 Hypothetical protein CBG07009 [Caenorhabditis briggsae] 2.0E-61
blast CAE62831 Hypothetical protein CBG07010 [Caenorhabditis briggsae] 2.0E-44
Sequence
Target Sequence 
>C. ELEGANS:181336_AT
atttcacttgtatgcccttccaagtctgctcaaaaacgttgagcttcatgtgtcagagct
gaaaattgacggatgcgactatgaaacatttgcaaagttccgtaaattcattgatcataa
ccaaaaaatattaaaggagattgggtttgtggtgaaaaacagtaaggagatttatctcca
gtttccgtattataatccggtcccgttggacgatatgcttcttcggctgaaaaacaatca
tgtacacattatctatctgggcttcccgattgaaaaactacaagaattggctatgaactg
gatcgacactaagaagccaattggtacctcactcttcctggttgttgagcattatacata
tgttatcgacgtgtttgagcatttaaccaaatactctaaagctattccttcaagactcac
tgatcttggaacttccttcttttcacattgtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCACTTGTATGCCCTTCCAAGT 93 17 354 Antisense
CCCTTCCAAGTCTGCTCAAAAACGT 131 255 368 Antisense
GATTTATCTCCAGTTTCCGTATTAT 59 429 522 Antisense
AATCCGGTCCCGTTGGACGATATGC 309 137 547 Antisense
GATATGCTTCTTCGGCTGAAAAACA 371 425 565 Antisense
TACACATTATCTATCTGGGCTTCCC 156 643 596 Antisense
TTGGCTATGAACTGGATCGACACTA 343 709 640 Antisense
GAAGCCAATTGGTACCTCACTCTTC 218 343 666 Antisense
CCTCACTCTTCCTGGTTGTTGAGCA 480 267 680 Antisense
GCTATTCCTTCAAGACTCACTGATC 567 303 754 Antisense
AACTTCCTTCTTTTCACATTGTGTA 372 139 783 Antisense
Sequence Source Affymetrix Proprietary Database