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[181333_at] G-protein coupled receptor, srh family

Description Y61B8A.2 /REP_DB=WormBase Gene ID /WP=CE16667 /TR=O45966 /GB=CAA16415.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 27      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 49
(3)
A 		41
(0.4)
M 		30.8
(-3)
A 		37.8
(-0.7)
A 		18
B 32
(-3)
A 		61.1
(3)
P 		48.9
(0.5)
A 		56.8
(2.1)
A 		29
C 34.7
(-2.5)
A 		43.2
(-1.3)
A 		31.6
(-3)
A 		72.5
(3)
M 		41
avr 38.6
(-2.5) 		48.4
(0.6) 		37.1
(-3) 		55.7
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 65.3
(3)
A 		12.9
(-2.6)
A 		25.3
(-1.2)
A 		24.9
(-1.3)
A 		55.9
(2)
A 		8.8
(-3)
A 		57
B 31.9
(0.6)
A 		50.5
(3)
M 		40.2
(1.7)
A 		4.7
(-3)
A 		21.8
(-0.8)
P 		32.9
(0.7)
A 		46
C 20.8
(-3)
A 		21.2
(-2.9)
A 		21.3
(-2.9)
A 		52.8
(3)
A 		29.5
(-1.4)
A 		27.6
(-1.7)
A 		32
avr 39.3
(3) 		28.2
(-1.1) 		28.9
(-0.9) 		27.5
(-1.4) 		35.7
(1.7) 		23.1
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 17.9
(3)
A 		8.9
(-1.4)
M 		8
(-1.8)
A 		5.5
(-3)
A 		12
B 10.2
(-3)
A 		15.1
(3)
P 		11.3
(-1.7)
A 		12.1
(-0.7)
A 		5
C 11.5
(-0.9)
A 		12.4
(3)
A 		11
(-3)
A 		12.2
(2.1)
M 		1
avr 13.2
(3) 		12.1
(1) 		10.1
(-2.6) 		9.9
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 12
(1)
A 		4.6
(-2)
A 		5.5
(-1.6)
A 		6.3
(-1.3)
A 		16.9
(3)
A 		2.1
(-3)
A 		15
B 11.1
(0.8)
A 		16.8
(3)
M 		9.8
(0.3)
A 		1.2
(-3)
A 		8.9
(-0)
P 		12.3
(1.3)
A 		16
C 7.7
(-0.3)
A 		6.5
(-1.7)
A 		5.4
(-3)
A 		10.6
(3)
A 		9.6
(1.8)
A 		9.2
(1.4)
A 		5
avr 10.3
(1.4) 		9.3
(0.4) 		6.9
(-2.1) 		6
(-3) 		11.8
(3) 		7.9
(-1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181333_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14411
Sequence Type Exemplar sequence
Representative Public ID Y61B8A.2 NCBI
Target Description Y61B8A.2 /REP_DB=WormBase Gene ID /WP=CE16667 /TR=O45966 /GB=CAA16415.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074971
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y61B8A.2 ENSEMBL cdna:known chromosome:CEL140:V:17258331:17259771:1 gene:Y61B8A.2 None
GENEFINDER00000011339 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17258331:17259712:1 None
SNAP00000011338 ENSEMBL cdna:SNAP chromosome:CEL140:V:17258331:17259712:1 None
NM_074971 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-115) (srh-115) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17258330-17259771(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-115
Ensembl Y61B8A.2
Entrez Gene 190449 Entrez gene
SwissProt O45966 EMBL-EBI
WormBase CE33238 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16415 Hypothetical protein Y61B8A.2 [Caenorhabditis elegans] ref|NP_507372.2| Serpentine Receptor, class H family member (srh-115) [Caenorhabditis elegans] 0.0
blast CAA16414 Hypothetical protein Y61B8A.1 [Caenorhabditis elegans] ref|NP_507371.2| Serpentine Receptor, class H family member (srh-116) [Caenorhabditis elegans] 1.0E-158
blast CAA16415 Hypothetical protein Y61B8A.2 [Caenorhabditis elegans] ref|NP_507372.2| Serpentine Receptor, class H family member (srh-115) [Caenorhabditis elegans] 1.0E-135
blast CAB04557 Hypothetical protein K03D7.6 [Caenorhabditis elegans] ref|NP_507433.1| Serpentine Receptor, class H family member (srh-118) [Caenorhabditis elegans] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-34
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.7E-76
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507372.2 7 31-53,66-88,108-130,151-173,207-229,256-278,293-315
Y61B8A.2 7 31-53,66-88,108-130,151-173,207-229,256-278,293-315
SNAP00000011338 5 31-53,79-101,135-157,184-206,221-243
GENEFINDER00000011339 7 31-53,66-88,108-130,151-173,207-229,256-278,293-315
Sequence
Target Sequence 
>C. ELEGANS:181333_AT
tcttttctctattttactccaatgtttcattcctctgactcttgttttgtgtccagtatt
tttggtattcagtgctcacttggccggtctctattatcaaacaatggtgaatcttacagt
ttgtagtgctggacttcatggtcttgccgaaagtatcgcaattgtaactgtgcatagacc
gtataggaaagccgttagtcaaatggctacagaatttaaaagtgagttatctcctttgtc
cgatccactttgtttgttaaaacacatatttaggcataatgttttcagggaggagacggg
cggttcaagtgttaccgtttctggcaaaccacatgagacacagtgtcaccatgagacaat
cattctgaaacaaatgtttcatttccatctgttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTTCTCTATTTTACTCCAATGT 419 615 783 Antisense
ACTCCAATGTTTCATTCCTCTGACT 514 97 798 Antisense
CTCTGACTCTTGTTTTGTGTCCAGT 412 231 815 Antisense
TTGGTATTCAGTGCTCACTTGGCCG 280 709 844 Antisense
CTTGGCCGGTCTCTATTATCAAACA 523 217 861 Antisense
TAGTGCTGGACTTCATGGTCTTGCC 221 655 906 Antisense
AAGTGAGTTATCTCCTTTGTCCGAT 405 157 1002 Antisense
TTGTCCGATCCACTTTGTTTGTTAA 73 705 1018 Antisense
GGGAGGAGACGGGCGGTTCAAGTGT 164 495 1070 Antisense
GTTCAAGTGTTACCGTTTCTGGCAA 507 445 1085 Antisense
AAATGTTTCATTTCCATCTGTTCTC 217 121 1154 Antisense
Sequence Source Affymetrix Proprietary Database