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[181332_at]

Description F55G1.6 /REP_DB=WormBase Gene ID /WP=CE07283 /TR=Q20846 /GB=AAB00643.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 96      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_total > 87      4grp_total > 16      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 36.6
(-3)
P 		109.3
(-1.7)
P 		106.3
(-1.8)
P 		376.9
(3)
P 		340
B 55.5
(-3)
P 		84.3
(-2)
P 		122.5
(-0.6)
P 		225.4
(3)
P 		170
C 46.4
(-3)
P 		100.4
(-1.3)
P 		111.1
(-0.9)
P 		232.2
(3)
P 		186
avr 46.2
(-3) 		98
(-1.7) 		113.3
(-1.3) 		278.2
(3) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 794
1 2 3 4 5 6 range
A 139.6
(-2.9)
P 		131.1
(-3)
P 		241.1
(-2.1)
P 		270.5
(-1.9)
P 		585
(0.7)
P 		861.2
(3)
P 		730
B 117.5
(-2.9)
P 		110.8
(-3)
P 		228.6
(-2)
P 		319.4
(-1.3)
P 		519.8
(0.4)
P 		842.1
(3)
P 		731
C 85.6
(-3)
A 		178.9
(-2.3)
P 		213.9
(-2)
P 		327
(-1.2)
P 		396.7
(-0.6)
P 		879.8
(3)
P 		794
avr 114.2
(-3) 		140.3
(-2.8) 		227.9
(-2.1) 		305.6
(-1.5) 		500.5
(0.1) 		861
(3) 		747
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 13.3
(-3)
P 		23.7
(-1.5)
P 		27.8
(-0.9)
P 		55.2
(3)
P 		42
B 17.7
(-3)
P 		20.8
(-2.4)
P 		28.4
(-0.9)
P 		48
(3)
P 		30
C 15.4
(-3)
P 		28.9
(0.4)
P 		38.7
(2.9)
P 		39.2
(3)
P 		24
avr 15.5
(-3) 		24.5
(-1.3) 		31.6
(0) 		47.5
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 25.7
(-3)
P 		46.6
(-2.3)
P 		52.5
(-2.1)
P 		68.6
(-1.6)
P 		176.5
(1.9)
P 		209.7
(3)
P 		184
B 40.9
(-2.9)
P 		36.9
(-3)
P 		55.5
(-2.6)
P 		84.6
(-2)
P 		211.2
(0.8)
P 		314
(3)
P 		277
C 31.7
(-3)
A 		54.6
(-2.5)
P 		54.4
(-2.5)
P 		65.8
(-2.2)
P 		128.4
(-0.8)
P 		294.5
(3)
P 		263
avr 32.8
(-3) 		46
(-2.7) 		54.1
(-2.5) 		73
(-2) 		172
(0.5) 		272.7
(3) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181332_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9335
Sequence Type Exemplar sequence
Representative Public ID F55G1.6 NCBI
Target Description F55G1.6 /REP_DB=WormBase Gene ID /WP=CE07283 /TR=Q20846 /GB=AAB00643.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068796(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068796 NCBI Caenorhabditis elegans F55G1.6 (F55G1.6) mRNA, complete cds. 11/11 None
SNAP00000005167 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7473566:7474810:1 11/11 None
GENEFINDER00000005181 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7473566:7474810:1 11/11 None
F55G1.6 ENSEMBL cdna:known chromosome:CEL140:IV:7473501:7474937:1 gene:F55G1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7473571-7474816(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G1.6
Entrez Gene 259576 Entrez gene
SwissProt Q20846 EMBL-EBI
WormBase CE34886 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00643 Hypothetical protein F55G1.6 [Caenorhabditis elegans] ref|NP_501197.2| F55G1.6 [Caenorhabditis elegans] 0.0
blast CAE61888 Hypothetical protein CBG05879 [Caenorhabditis briggsae] 1.0E-102
blast CAE61888 Hypothetical protein CBG05879 [Caenorhabditis briggsae] 3.0E-99
blast CAE75297 Hypothetical protein CBG23267 [Caenorhabditis briggsae] 7.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501197.2 2 184-206,226-248
F55G1.6 2 184-206,226-248
SNAP00000005167 2 199-221,241-263
GENEFINDER00000005181 2 184-206,226-248
Sequence
Target Sequence 
>C. ELEGANS:181332_AT
tcactttggatgtctacgttctcttatcgaagagcaagcatcatgttctgaatgcagtgt
catcttcagtgcattcaaacctgcaaacttcacacagtttttcaaggcgaactggatttt
ctattttctctacgccttgttcctcggtgtctgctccacttcgttcttgtttgctctaag
caactccctgattttcacaaagggaagtggtacagatgacgatatcaataaagagatagc
actaagtctcctctccgtgttctttttcgtaatcatcgtctcaacaatgttctgcgtgat
caagtacaccatctcaattgcaattccaaaattcaaaatcacacgaggaaaagtaatttt
gaaggcgttcaagaatggagctcacccgaaaacgtctaaacaagagctggagcctctaca
atcgtcggaattcgagaatatccctctgaatgatctcagaaaatcttctgcaggagatac
ggttggattagtagaagaagcacgttgcgaagtagatgatatcactttgggacagcacat
gtttggagtttacgcaacacaccactcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTTTGGATGTCTACGTTCTCTT 177 627 495 Antisense
CATTCAAACCTGCAAACTTCACACA 20 217 566 Antisense
GGCGAACTGGATTTTCTATTTTCTC 316 541 600 Antisense
TCTAAGCAACTCCCTGATTTTCACA 72 613 669 Antisense
AGAGATAGCACTAAGTCTCCTCTCC 359 69 726 Antisense
CTCCGTGTTCTTTTTCGTAATCATC 638 233 747 Antisense
GTACACCATCTCAATTGCAATTCCA 370 461 798 Antisense
AATGGAGCTCACCCGAAAACGTCTA 81 163 868 Antisense
AAGAGCTGGAGCCTCTACAATCGTC 74 155 896 Antisense
GATATCACTTTGGGACAGCACATGT 335 425 1012 Antisense
GGAGTTTACGCAACACACCACTCCT 552 517 1039 Antisense
Sequence Source Affymetrix Proprietary Database