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[181331_s_at]

Description K09C6.8 /REP_DB=WormBase Gene ID /WP=CE12002 /TR=O16940 /GB=AAB70674.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 1.3
(-3)
A 		2.4
(3)
A 		1.3
(-3)
A 		2.1
(1.4)
A 		1
B 2.5
(3)
A 		1.7
(0.5)
A 		0.6
(-3)
A 		1.6
(0.2)
A 		2
C 1.6
(-3)
A 		1.4
(-3)
A 		2.7
(-2.8)
A 		34
(3)
A 		33
avr 1.8
(-2.8) 		1.8
(-2.8) 		1.5
(-3) 		12.6
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 6.4
(-2.6)
A 		1.4
(-3)
A 		18.1
(-1.6)
A 		1.5
(-3)
A 		48.9
(1.1)
A 		70.8
(3)
A 		69
B 1.1
(-3)
A 		1.4
(-2.9)
A 		1.7
(-2.9)
A 		1.7
(-2.9)
A 		25
(1.3)
A 		34.1
(3)
A 		33
C 2.4
(-3)
A 		2.4
(-3)
A 		3
(-3)
A 		8.1
(-2.6)
A 		34.7
(-0.6)
A 		81.8
(3)
A 		79
avr 3.3
(-2.8) 		1.7
(-3) 		7.6
(-2.4) 		3.8
(-2.8) 		36.2
(0.4) 		62.2
(3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.5
(3)
A 		0.5
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0
B 0.8
(3)
A 		0.4
(-0.4)
A 		0.1
(-3)
A 		0.3
(-1.3)
A 		1
C 0.5
(-2.9)
A 		0.4
(-3)
A 		1
(-2.3)
A 		5.7
(3)
A 		5
avr 0.6
(-2.3) 		0.4
(-3) 		0.5
(-2.6) 		2.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 1.2
(-2.7)
A 		0.5
(-3)
A 		3.9
(-1.8)
A 		0.4
(-3)
A 		14.8
(2.1)
A 		17.2
(3)
A 		17
B 0.4
(-3)
A 		0.5
(-3)
A 		0.4
(-3)
A 		0.5
(-3)
A 		10.1
(1.7)
A 		12.7
(3)
A 		12
C 0.9
(-3)
A 		0.7
(-3)
A 		0.8
(-3)
A 		1.6
(-2.8)
A 		11.2
(-0.6)
A 		27.4
(3)
A 		27
avr 0.8
(-2.9) 		0.6
(-3) 		1.7
(-2.6) 		0.8
(-2.9) 		12
(0.7) 		19.1
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181331_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15604
Sequence Type Exemplar sequence
Representative Public ID K09C6.8 NCBI
Target Description K09C6.8 /REP_DB=WormBase Gene ID /WP=CE12002 /TR=O16940 /GB=AAB70674.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070936(11), NM_070937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070936 NCBI Caenorhabditis elegans K09C6.7 (K09C6.7) mRNA, complete cds. 11/11 A 
NM_070937 NCBI Caenorhabditis elegans K09C6.8 (K09C6.8) mRNA, complete cds. 11/11 A 
SNAP00000012264 ENSEMBL cdna:SNAP chromosome:CEL140:V:835633:838903:-1 11/11 None
SNAP00000012266 ENSEMBL cdna:SNAP chromosome:CEL140:V:840086:842432:-1 11/11 None
GENEFINDER00000012284 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:840086:842432:-1 11/11 None
GENEFINDER00000012285 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:835670:838157:-1 11/11 None
K09C6.7 ENSEMBL cdna:known chromosome:CEL140:V:835633:838903:-1 gene:K09C6.7 11/11 A 
K09C6.8 ENSEMBL cdna:known chromosome:CEL140:V:840086:843027:-1 gene:K09C6.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014347 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:840085-843027(-) 100.0 100.0
chrV:836329-837450(-) 52.09 52.09
Public Domain and Genome References
Gene Title

Ensembl K09C6.7
K09C6.8
Entrez Gene 178589 Entrez gene
178590 Entrez gene
SwissProt O16939 EMBL-EBI
O16940 EMBL-EBI
WormBase CE35338 Wormbase
CE12002 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70675 Hypothetical protein K09C6.7 [Caenorhabditis elegans] ref|NP_503337.2| K09C6.7 [Caenorhabditis elegans] 0.0
blast AAB70674 Hypothetical protein K09C6.8 [Caenorhabditis elegans] ref|NP_503338.1| K09C6.8 [Caenorhabditis elegans] 0.0
blast AAO25993 Hypothetical protein T10B5.2 [Caenorhabditis elegans] ref|NP_872237.2| T10B5.2 [Caenorhabditis elegans] 1.0E-170
Sequence
Target Sequence 
>C. ELEGANS:181331_S_AT
actccgaaacgcgtcaaaacatcagtcgtaacattcgtacaacgaagcacaatgggctgc
agcctctttacgttcaacagtcccgacatgcccgtaacaaatcggagcgagagccactgt
cgaagaacgtcatcaacacgtatttgtcgaggcgtcagcatttccgattggcacgaggac
ctgccgacgattacgagtcgtggttttacatttgtgcacggtttatcacgctggaaacct
tcgaatggcacgatgaggaggatcacatagtggcggcaacaatgaagtacaactatctgg
ccacgtgcacgtttccggacccagatactaatgagaggatggcaaagattctacagtact
gtctgtctgcgacgaatacgaacgccaatgtagtcgcgttttatctcgaacgcgtcattc
agaactggaaagaaaacattccgccaaaggagttctattcgtggcaggacacggactccg
ttaatactaagcacgaggcctggatggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCCGAAACGCGTCAAAACATCAG 677 97 1100 Antisense
ACATCAGTCGTAACATTCGTACAAC 383 101 1118 Antisense
TGAAGTACAACTATCTGGCCACGTG 475 573 1382 Antisense
TCTACAGTACTGTCTGTCTGCGACG 371 613 1449 Antisense
GTCTGCGACGAATACGAACGCCAAT 689 469 1464 Antisense
GCCAATGTAGTCGCGTTTTATCTCG 307 277 1483 Antisense
ATCTCGAACGCGTCATTCAGAACTG 497 31 1502 Antisense
AAACATTCCGCCAAAGGAGTTCTAT 218 127 1533 Antisense
AGGAGTTCTATTCGTGGCAGGACAC 630 55 1547 Antisense
CACGGACTCCGTTAATACTAAGCAC 115 199 1569 Antisense
TACTAAGCACGAGGCCTGGATGGAA 197 645 1584 Antisense
Sequence Source Affymetrix Proprietary Database