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[181330_at]

Description Y40H7A.4 /REP_DB=WormBase Gene ID /WP=CE21815 /TR=Q9XWA5 /GB=CAA22061.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 37      6grp_total > 04      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 43.4
(-3)
P 		78.4
(3)
P 		70.1
(1.6)
P 		76.9
(2.7)
P 		35
B 45
(-3)
P 		80.9
(3)
P 		69
(1)
P 		61.3
(-0.3)
P 		36
C 48.2
(-2.4)
P 		50.5
(-2.2)
A 		41.2
(-3)
P 		115.2
(3)
M 		74
avr 45.5
(-3) 		69.9
(0.8) 		60.1
(-0.8) 		84.5
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 82.1
(3)
P 		65.3
(1.4)
P 		18.2
(-3)
A 		18.7
(-3)
A 		32.6
(-1.6)
A 		23.4
(-2.5)
A 		64
B 32.9
(1.2)
P 		33.5
(1.3)
A 		40.6
(2.9)
A 		13.2
(-3)
A 		41.3
(3)
P 		27.6
(0.1)
P 		28
C 50.5
(-1.1)
P 		42.7
(-1.8)
M 		34.1
(-2.6)
A 		96.4
(3)
A 		29.1
(-3)
A 		40
(-2)
A 		67
avr 55.2
(3) 		47.2
(1.1) 		31
(-2.8) 		42.8
(0) 		34.3
(-2) 		30.3
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 15.8
(0.9)
P 		17
(1.9)
P 		18.3
(3)
P 		11.3
(-3)
P 		7
B 14.4
(-1.9)
P 		20
(3)
P 		16
(-0.5)
P 		13.1
(-3)
P 		7
C 15.9
(-1.2)
P 		14.5
(-2.9)
A 		14.4
(-3)
P 		19.4
(3)
M 		5
avr 15.4
(-1.2) 		17.2
(3) 		16.2
(0.7) 		14.6
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 15.1
(0.5)
P 		23.2
(3)
P 		4
(-3)
A 		4.7
(-2.8)
A 		9.8
(-1.2)
A 		5.7
(-2.5)
A 		19
B 11.4
(0.6)
P 		11.2
(0.5)
A 		9.9
(-0.1)
A 		3.5
(-3)
A 		16.8
(3)
P 		10.3
(0.1)
P 		13
C 18.7
(2.6)
P 		13
(-0.6)
M 		8.7
(-3)
A 		19.4
(3)
A 		9.4
(-2.6)
A 		13.4
(-0.4)
A 		11
avr 15.1
(2.5) 		15.8
(3) 		7.5
(-3) 		9.2
(-1.8) 		12
(0.3) 		9.8
(-1.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181330_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10079
Sequence Type Exemplar sequence
Representative Public ID Y40H7A.4 NCBI
Target Description Y40H7A.4 /REP_DB=WormBase Gene ID /WP=CE21815 /TR=Q9XWA5 /GB=CAA22061.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070430 NCBI Caenorhabditis elegans Y40H7A.4 (Y40H7A.4) mRNA, complete cds. 11/11 None
SNAP00000019400 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15167813:15168848:-1 10/11 None
GENEFINDER00000019413 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15167813:15172299:-1 11/11 None
Y40H7A.4 ENSEMBL cdna:known chromosome:CEL140:IV:15167813:15172299:-1 gene:Y40H7A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15167818-15172305(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40H7A.4
Entrez Gene 189803 Entrez gene
SwissProt Q9XWA5 EMBL-EBI
WormBase CE21815 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22061 Hypothetical protein Y40H7A.4 [Caenorhabditis elegans] ref|NP_502831.1| Y40H7A.4 [Caenorhabditis elegans] 1.0E-152
blast CAA22061 Hypothetical protein Y40H7A.4 [Caenorhabditis elegans] ref|NP_502831.1| Y40H7A.4 [Caenorhabditis elegans] 4.0E-93
blast CAE68108 Hypothetical protein CBG13751 [Caenorhabditis briggsae] 1.0E-90
blast CAE68108 Hypothetical protein CBG13751 [Caenorhabditis briggsae] 8.0E-66
blast AAB70362 Hypothetical protein K06H6.2 [Caenorhabditis elegans] ref|NP_503254.1| K06H6.2 [Caenorhabditis elegans] 6.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 7.2E-123
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502831.1 1 13-32
Y40H7A.4 1 13-32
GENEFINDER00000019413 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:181330_AT
gagacctgaagcattttgtccattaaaaattaaaattggaggaaaaggggacggaggaaa
gatcgtttgtaatccaaaagcgattaaggatgattgcacgttaatgtcacttggactgaa
caatcaggtagactatgaacaggaaatatacaacatcacagggggaaactgtcttctttt
ggctgctgacaaggacccccaaaacatgaacacattgagaatcttctccactttaaaatc
tcacgtctacgttggaatgataccggataaccttacaattgctcatattatgcacagcga
gtacaagactgaagtggaaattttgaagattgatattgaaggtggagagcacacaggctt
ggagcaatttttgagagatttctttgtttgtcagattctcatagaaatccacggctggcc
tccagagcacttggacatgctccagaagatctccagatatggtttccgaattttcaatat
tgagccaaacagactgtgcacaagatgtgcagagtacagctttatcaacgagctctgtat
gagccaatatagtgttttaccgctggctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACCTGAAGCATTTTGTCCATTA 100 395 288 Antisense
AAGGACCCCCAAAACATGAACACAT 103 159 478 Antisense
GAATCTTCTCCACTTTAAAATCTCA 204 327 506 Antisense
ACCGGATAACCTTACAATTGCTCAT 4 89 549 Antisense
GGTGGAGAGCACACAGGCTTGGAGC 285 499 628 Antisense
GATTTCTTTGTTTGTCAGATTCTCA 113 429 664 Antisense
CTCATAGAAATCCACGGCTGGCCTC 438 229 685 Antisense
TGGCCTCCAGAGCACTTGGACATGC 1 545 703 Antisense
GACATGCTCCAGAAGATCTCCAGAT 615 369 721 Antisense
GTGCAGAGTACAGCTTTATCAACGA 686 479 794 Antisense
ATATAGTGTTTTACCGCTGGCTAAT 591 19 834 Antisense
Sequence Source Affymetrix Proprietary Database