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[181329_s_at]

Description C25A1.10 /REP_DB=WormBase Gene ID /WP=CE08376 /TR=Q9XVS4 /GB=CAB02755.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_highest_8_8 > 07      4grp_high_8_8 > 14      6grp_highest_nonorm > 57      6grp_total > 48      4grp_total > 17      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3025
1 2 3 4 range
A 4318.6
(-3)
P 		5696.8
(1.1)
P 		4581.4
(-2.2)
P 		6325.4
(3)
P 		2007
B 4257.7
(-3)
P 		4811.3
(-1.8)
P 		4799.3
(-1.9)
P 		7126.8
(3)
P 		2869
C 4255.9
(-2.6)
P 		4101.4
(-3)
P 		4545.9
(-1.9)
P 		6430.1
(3)
P 		2329
avr 4277.4
(-3) 		4869.8
(-1.5) 		4642.2
(-2.1) 		6627.4
(3) 		2350

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2664
1 2 3 4 5 6 range
A 3126.9
(1.2)
P 		2920
(0.7)
P 		1273.5
(-3)
P 		2140.1
(-1)
P 		2334.1
(-0.6)
P 		3937.8
(3)
P 		2664
B 2375.1
(0.6)
P 		2609.8
(2)
P 		2030.9
(-1.4)
P 		1744.9
(-3)
P 		1899.3
(-2.1)
P 		2786.7
(3)
P 		1042
C 2721.2
(3)
P 		2491.4
(1.5)
P 		2292.1
(0.3)
P 		1773.7
(-3)
P 		2315.9
(0.4)
P 		2583.2
(2.1)
P 		948
avr 2741.1
(1.2) 		2673.7
(0.9) 		1865.5
(-3) 		1886.2
(-2.9) 		2183.1
(-1.5) 		3102.6
(3) 		1237
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 659
1 2 3 4 range
A 1572.4
(3)
P 		1236.6
(-0.1)
P 		1197.7
(-0.5)
P 		925.9
(-3)
P 		647
B 1357.8
(0.6)
P 		1188.3
(-1.9)
P 		1112.1
(-3)
P 		1518.7
(3)
P 		407
C 1408.8
(0.9)
P 		1179.2
(-1.9)
P 		1584.4
(3)
P 		1084.2
(-3)
P 		500
avr 1446.3
(3) 		1201.4
(-2.4) 		1298.1
(-0.3) 		1176.3
(-3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 762
1 2 3 4 5 6 range
A 576.4
(-0.6)
P 		1038.5
(3)
P 		277.3
(-3)
P 		542.8
(-0.9)
P 		704.3
(0.4)
P 		958.7
(2.4)
P 		761
B 826.4
(0.8)
P 		868.7
(1.2)
P 		493.2
(-2.7)
P 		462.2
(-3)
P 		771.6
(0.2)
P 		1039.1
(3)
P 		577
C 1008.6
(3)
P 		760.2
(0.7)
P 		583.4
(-0.9)
P 		356.7
(-3)
P 		749.4
(0.6)
P 		864.7
(1.7)
P 		652
avr 803.8
(1.2) 		889.1
(2.2) 		451.3
(-3) 		453.9
(-3) 		741.8
(0.5) 		954.2
(3) 		503
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181329_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2292
Sequence Type Exemplar sequence
Representative Public ID C25A1.10 NCBI
Target Description C25A1.10 /REP_DB=WormBase Gene ID /WP=CE08376 /TR=Q9XVS4 /GB=CAB02755.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025833(11), NM_001025834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025833 NCBI Caenorhabditis elegans Dauer or Aging adult Overexpression family member (dao-5) (dao-5) mRNA, complete cds. 11/11 None
NM_001025834 NCBI Caenorhabditis elegans Dauer or Aging adult Overexpression family member (dao-5) (dao-5) mRNA, complete cds. 11/11 None
SNAP00000000659 ENSEMBL cdna:SNAP chromosome:CEL140:I:10195893:10199001:-1 11/11 None
GENEFINDER00000000669 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10195893:10199001:-1 11/11 None
C25A1.10 ENSEMBL cdna:known chromosome:CEL140:I:10195636:10199017:-1 gene:C25A1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10195823-10198932(-) 100.0 100.0
Public Domain and Genome References
Ensembl C25A1.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79153 Hypothetical protein C25A1.10b [Caenorhabditis elegans] ref|NP_001021005.1| Dauer or Aging adult Overexpression family member (dao-5) [Caenorhabditis elegans] 3.0E-67
blast CAB02755 Hypothetical protein C25A1.10a [Caenorhabditis elegans] ref|NP_001021004.1| Dauer or Aging adult Overexpression family member (dao-5) [Caenorhabditis elegans] 3.0E-67
blast CAI79153 Hypothetical protein C25A1.10b [Caenorhabditis elegans] ref|NP_001021005.1| Dauer or Aging adult Overexpression family member (dao-5) [Caenorhabditis elegans] 5.0E-67
blast CAB02755 Hypothetical protein C25A1.10a [Caenorhabditis elegans] ref|NP_001021004.1| Dauer or Aging adult Overexpression family member (dao-5) [Caenorhabditis elegans] 5.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR007718 EMBL-EBI SRP40, C-terminal 2.7E-69
Pfam IPR007718 EMBL-EBI SRP40, C-terminal 2.7E-69
Sequence
Target Sequence 
>C. ELEGANS:181329_S_AT
tcttctgatgacgaggcaccggctaagaagacaccagccaagtcaacacctgcaaaaacc
gctgtgaaaaaagaagcctcttcatcgtcagacgattcttcggatgatgagaaaacgaaa
aagaagtctgccaccacaccagcaaaatcaactccaaagactgcactaaagaaagctgaa
tcttctgattcctctgatgacgacgaagatcttccaaaaccatctaaggctgtcactcca
agaccacaacgtgctgactctgaagaatccgccgagaccgaggagagcagttcaagaaca
ccggctttgaaggcaaaaccattggctacctcgactgaaaaggcggtctatgaaaaccga
aaaagaaagtcttcaccattccgacgcgtgcaaatgacaaaggatagcgtttctgaaaaa
tttagaaacaaccagcatgattcgcacttcgatcaatggggacagcgtgccaatgaaagc
ct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTGATGACGAGGCACCGGCTA 344 615 2326 Antisense
ACCAGCCAAGTCAACACCTGCAAAA 504 85 2358 Antisense
AAAGAAGCCTCTTCATCGTCAGACG 201 123 2395 Antisense
GCCACCACACCAGCAAAATCAACTC 462 279 2455 Antisense
AAAACCATCTAAGGCTGTCACTCCA 236 131 2541 Antisense
CAAGACCACAACGTGCTGACTCTGA 270 185 2564 Antisense
AGAATCCGCCGAGACCGAGGAGAGC 9 73 2589 Antisense
AGGCAAAACCATTGGCTACCTCGAC 491 53 2636 Antisense
TCACCATTCCGACGCGTGCAAATGA 293 625 2698 Antisense
ACAACCAGCATGATTCGCACTTCGA 418 113 2753 Antisense
GGGGACAGCGTGCCAATGAAAGCCT 449 497 2783 Antisense
Sequence Source Affymetrix Proprietary Database