[Home] | [Total List]

[181328_at]

Description K02E11.4 /REP_DB=WormBase Gene ID /WP=CE11650 /TR=Q21140 /GB=CAB01218.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 81      6grp_total > 20      4grp_total > 61      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 574.9
(3)
P 		543.3
(2.2)
P 		558.4
(2.6)
P 		344.5
(-3)
P 		230
B 631.6
(3)
P 		505.4
(0.4)
P 		502.5
(0.3)
P 		344.1
(-3)
P 		288
C 601.8
(3)
P 		505.1
(0.5)
P 		572.7
(2.2)
P 		371.3
(-3)
P 		231
avr 602.8
(3) 		517.9
(1) 		544.5
(1.6) 		353.3
(-3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 229.5
(-0.9)
P 		329.5
(1.5)
P 		391.8
(3)
P 		332.6
(1.6)
P 		141.5
(-3)
P 		161.7
(-2.5)
P 		250
B 258
(-1.4)
P 		402.1
(3)
P 		334.7
(1)
P 		211.1
(-2.8)
P 		217.6
(-2.6)
P 		203.4
(-3)
P 		199
C 239.8
(-1.5)
P 		457.7
(3)
P 		262.7
(-1.1)
P 		185.6
(-2.7)
P 		169.5
(-3)
P 		227.3
(-1.8)
P 		288
avr 242.4
(-1.2) 		396.4
(3) 		329.7
(1.2) 		243.1
(-1.2) 		176.2
(-3) 		197.5
(-2.4) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 209.3
(3)
P 		117.9
(-0.5)
P 		146
(0.6)
P 		50.4
(-3)
P 		159
B 201.4
(3)
P 		124.8
(-0.6)
P 		116.4
(-1)
P 		73.3
(-3)
P 		128
C 199.2
(3)
P 		145.2
(0.6)
P 		199.6
(3)
P 		62.6
(-3)
P 		137
avr 203.3
(3) 		129.3
(-0.1) 		154
(0.9) 		62.1
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 42.3
(-2.8)
P 		117.2
(3)
P 		85.3
(0.5)
P 		84.4
(0.5)
P 		42.7
(-2.7)
P 		39.4
(-3)
P 		78
B 89.8
(-0.4)
P 		133.8
(3)
P 		81.3
(-1)
P 		55.9
(-3)
P 		88.4
(-0.5)
P 		75.8
(-1.5)
P 		78
C 88.9
(0)
P 		139.7
(3)
P 		66.9
(-1.3)
P 		37.3
(-3)
P 		54.8
(-2)
P 		76.1
(-0.7)
P 		102
avr 73.7
(-1.8) 		130.2
(3) 		77.8
(-1.4) 		59.2
(-3) 		62
(-2.8) 		63.8
(-2.6) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181328_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13792
Sequence Type Exemplar sequence
Representative Public ID K02E11.4 NCBI
Target Description K02E11.4 /REP_DB=WormBase Gene ID /WP=CE11650 /TR=Q21140 /GB=CAB01218.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074123(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074123 NCBI Caenorhabditis elegans K02E11.4 (K02E11.4) mRNA, complete cds. 11/11 None
SNAP00000039262 ENSEMBL cdna:SNAP chromosome:CEL140:V:14250112:14250663:-1 11/11 None
GENEFINDER00000039270 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14250112:14250663:-1 11/11 None
K02E11.4 ENSEMBL cdna:known chromosome:CEL140:V:14250112:14250663:-1 gene:K02E11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14250111-14250663(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02E11.4
Entrez Gene 186895 Entrez gene
SwissProt Q21140 EMBL-EBI
WormBase CE11650 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01218 Hypothetical protein K02E11.4 [Caenorhabditis elegans] ref|NP_506524.1| K02E11.4 [Caenorhabditis elegans] 2.0E-41
blast CAB01218 Hypothetical protein K02E11.4 [Caenorhabditis elegans] ref|NP_506524.1| K02E11.4 [Caenorhabditis elegans] 1.0E-38
blast CAE60992 Hypothetical protein CBG04729 [Caenorhabditis briggsae] 6.0E-26
blast CAB01222 Hypothetical protein K02E11.5 [Caenorhabditis elegans] ref|NP_506526.1| K02E11.5 [Caenorhabditis elegans] 5.0E-25
blast CAB01222 Hypothetical protein K02E11.5 [Caenorhabditis elegans] ref|NP_506526.1| K02E11.5 [Caenorhabditis elegans] 1.0E-19
blast CAE60992 Hypothetical protein CBG04729 [Caenorhabditis briggsae] 3.0E-19
Sequence
Target Sequence 
>C. ELEGANS:181328_AT
ggtgaggacttgtatactcgcaattttcagtctacttgtaattggcaccaactctcagcc
aggaggaggtggtatgccaggtggtggtggcatgatgtatggaaaggtaaacgccactgt
gacaatttctctgccagtaagtgcaaactatcgcagactagttaacaagaaaaaggtccc
atctggagtcacgacttataacaaaaataagaaggcactgattatcaagaaaatgagatt
agaagactttggagactatatgactggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGAGGACTTGTATACTCGCAATT 133 499 15 Antisense
TACTCGCAATTTTCAGTCTACTTGT 345 647 29 Antisense
GTCTACTTGTAATTGGCACCAACTC 473 469 44 Antisense
TGGCACCAACTCTCAGCCAGGAGGA 550 545 57 Antisense
GAGGAGGTGGTATGCCAGGTGGTGG 92 403 77 Antisense
CAGGTGGTGGTGGCATGATGTATGG 565 207 92 Antisense
GAAAGGTAAACGCCACTGTGACAAT 256 361 116 Antisense
TGTGACAATTTCTCTGCCAGTAAGT 562 555 132 Antisense
GTAAGTGCAAACTATCGCAGACTAG 188 461 151 Antisense
AAAGGTCCCATCTGGAGTCACGACT 561 119 186 Antisense
GACTTTGGAGACTATATGACTGGAA 484 371 259 Antisense
Sequence Source Affymetrix Proprietary Database