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[181327_at]

Description F52C6.9 /REP_DB=WormBase Gene ID /WP=CE10818 /TR=O44816 /GB=AAB94975.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 3
(-1.8)
A 		8.9
(3)
A 		1.5
(-3)
A 		3.1
(-1.7)
A 		7
B 27.2
(3)
A 		3.8
(-2.4)
A 		1.1
(-3)
A 		16.6
(0.6)
A 		26
C 19.6
(-0.6)
A 		2.7
(-2.8)
A 		0.8
(-3)
A 		47.1
(3)
A 		46
avr 16.6
(1.4) 		5.1
(-1.9) 		1.1
(-3) 		22.3
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 27.5
(3)
A 		5.2
(-2.3)
A 		5.3
(-2.2)
A 		2.1
(-3)
A 		2.4
(-2.9)
A 		7.9
(-1.6)
A 		25
B 9.2
(-1.8)
A 		1.9
(-3)
A 		6.7
(-2.2)
A 		38.2
(3)
A 		7.8
(-2)
A 		14.8
(-0.9)
A 		36
C 16.2
(2.6)
A 		6.1
(-1.7)
A 		5.2
(-2.1)
A 		3
(-3)
A 		17.1
(3)
A 		8.6
(-0.6)
A 		14
avr 17.6
(3) 		4.4
(-3) 		5.7
(-2.4) 		14.4
(1.5) 		9.1
(-0.9) 		10.4
(-0.3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-0.2)
A 		1.9
(3)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		2
B 8.7
(3)
A 		0.9
(-2.5)
A 		0.2
(-3)
A 		3.5
(-0.7)
A 		9
C 6.5
(1.9)
A 		0.8
(-2.6)
A 		0.3
(-3)
A 		7.9
(3)
A 		8
avr 5.4
(3) 		1.2
(-1.9) 		0.3
(-3) 		4
(1.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.1
(3)
A 		1.9
(-1.2)
A 		1.2
(-2.1)
A 		0.5
(-3)
A 		0.7
(-2.7)
A 		1.9
(-1.2)
A 		5
B 3.2
(-1.4)
A 		0.6
(-3)
A 		1.6
(-2.4)
A 		10.1
(3)
A 		3.2
(-1.4)
A 		5.5
(0.1)
A 		10
C 6
(3)
A 		1.8
(-1.7)
A 		1.3
(-2.2)
A 		0.6
(-3)
A 		5.5
(2.4)
A 		2.9
(-0.4)
A 		5
avr 4.8
(3) 		1.4
(-3) 		1.4
(-3) 		3.7
(1.1) 		3.1
(0) 		3.4
(0.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181327_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5449
Sequence Type Exemplar sequence
Representative Public ID F52C6.9 NCBI
Target Description F52C6.9 /REP_DB=WormBase Gene ID /WP=CE10818 /TR=O44816 /GB=AAB94975.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061722(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061722 NCBI Caenorhabditis elegans F52C6.9 (F52C6.9) mRNA, complete cds. 10/11 None
SNAP00000005721 ENSEMBL cdna:SNAP chromosome:CEL140:II:1918321:1919101:-1 10/11 None
GENEFINDER00000005743 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1918321:1919441:-1 10/11 None
F52C6.9 ENSEMBL cdna:known chromosome:CEL140:II:1918321:1919441:-1 gene:F52C6.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1918319-1919440(-) 100.0 100.0
Public Domain and Genome References
Ensembl F52C6.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494123 F52C6.9 [Caenorhabditis elegans] 1.0E-151
blast AAF39859 Hypothetical protein F59H6.11 [Caenorhabditis elegans] ref|NP_494158.1| F59H6.11 [Caenorhabditis elegans] 1.0E-112
blast NP_494123 F52C6.9 [Caenorhabditis elegans] 1.0E-102
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 2.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 8.0E-38
Pfam IPR002083 EMBL-EBI MATH 3.6E-20
Pfam IPR000210 EMBL-EBI BTB/POZ domain 8.0E-38
Sequence
Target Sequence 
>C. ELEGANS:181327_AT
gaaattcgcgcgcaactgtcaagatcagaaatatgactggagttttcaaaggcaatctca
gatggttcgatgagtcaaacgagaagttttccgatgtcattattgcagtcgaaaacgaga
agttctacgttttgaagcagttcctcgcgtctcactcttcacacttcaatgcactcttcc
tgggaaaatgcgaggaggaagccgaaaaatcagaatttacacttcaggatatcgattcta
ccgattttcagaatcttctcgaagttcttcatggagaaccggctatcgatgaggaaacag
ttcaaggaattctccatttggctcacatgtatgatatgccgttcccaactcgaaaatgcg
aggaattccttattgaactatctgaaaaatcgacaaaggaaaagctgaaaatcgctaagc
agttccaactggagaagttgaagatgcactgtctctcaaaaatcgatactgtcgatcaga
tcaaagcggcgatggcgggcgatccgactgaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTCGCGCGCAACTGTCAAGAT 399 363 239 Antisense
AAGGCAATCTCAGATGGTTCGATGA 171 161 287 Antisense
AAACGAGAAGTTTTCCGATGTCATT 637 123 315 Antisense
TTCCGATGTCATTATTGCAGTCGAA 338 699 327 Antisense
CTTCAATGCACTCTTCCTGGGAAAA 619 219 402 Antisense
AGTTCTTCATGGAGAACCGGCTATC 637 57 501 Antisense
ATTCTCCATTTGGCTCACATGTATG 147 9 547 Antisense
GAGGAATTCCTTATTGAACTATCTG 351 405 598 Antisense
GAAAATCGCTAAGCAGTTCCAACTG 577 353 645 Antisense
CAGATCAAAGCGGCGATGGCGGGCG 206 207 715 Antisense
GATGGCGGGCGATCCGACTGAAATG 123 407 729 Antisense
Sequence Source Affymetrix Proprietary Database