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[181326_at]

Description F15E6.2 /REP_DB=WormBase Gene ID /WP=CE16991 /TR=O44497 /GB=AAB92062.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 81      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1357
1 2 3 4 range
A 72.3
(-3)
A 		1069.4
(2.4)
P 		1186.6
(3)
P 		181.5
(-2.4)
A 		1114
B 75.9
(-3)
A 		1097.8
(1.7)
P 		1392
(3)
P 		158.3
(-2.6)
A 		1316
C 34.7
(-3)
A 		1126
(2.2)
P 		1302.1
(3)
P 		206.1
(-2.2)
A 		1267
avr 61
(-3) 		1097.7
(2) 		1293.6
(3) 		182
(-2.4) 		1233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1426
1 2 3 4 5 6 range
A 141
(-3)
A 		978.1
(1.1)
P 		714.5
(-0.2)
P 		1327.5
(2.9)
P 		1356
(3)
P 		265.5
(-2.4)
P 		1215
B 127.5
(-3)
A 		796.2
(0.4)
P 		627.6
(-0.5)
P 		1311
(3)
P 		1290.7
(2.9)
P 		297.5
(-2.1)
P 		1184
C 133.1
(-3)
P 		964.7
(0.5)
P 		537.2
(-1.3)
P 		1553.6
(3)
P 		1219.5
(1.6)
P 		344.2
(-2.1)
P 		1421
avr 133.9
(-3) 		913
(0.7) 		626.4
(-0.7) 		1397.4
(3) 		1288.7
(2.5) 		302.4
(-2.2) 		1264
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 442
1 2 3 4 range
A 26.3
(-3)
A 		232.1
(1.3)
P 		310.2
(3)
P 		26.6
(-3)
A 		284
B 24.2
(-3)
A 		271.1
(2)
P 		322.6
(3)
P 		33.7
(-2.8)
A 		298
C 11.5
(-3)
A 		323.7
(1.2)
P 		453.8
(3)
P 		34.7
(-2.7)
A 		442
avr 20.7
(-3) 		275.6
(1.5) 		362.2
(3) 		31.7
(-2.8) 		342

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 498
1 2 3 4 5 6 range
A 26
(-3)
A 		347.8
(2)
P 		155.6
(-1)
P 		336.7
(1.9)
P 		409.2
(3)
P 		64.6
(-2.4)
P 		383
B 44.4
(-3)
A 		265
(-0.2)
P 		152.4
(-1.7)
P 		347.2
(0.8)
P 		524.4
(3)
P 		110.9
(-2.2)
P 		480
C 49.3
(-3)
P 		294.4
(1.3)
P 		136.7
(-1.5)
P 		312.4
(1.6)
P 		394.6
(3)
P 		115.2
(-1.9)
P 		345
avr 39.9
(-3) 		302.4
(0.9) 		148.2
(-1.4) 		332.1
(1.4) 		442.7
(3) 		96.9
(-2.2) 		403
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181326_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10514
Sequence Type Exemplar sequence
Representative Public ID F15E6.2 NCBI
Target Description F15E6.2 /REP_DB=WormBase Gene ID /WP=CE16991 /TR=O44497 /GB=AAB92062.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068137(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068137 NCBI Caenorhabditis elegans F15E6.2 (F15E6.2) mRNA, complete cds. 11/11 None
SNAP00000035369 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4301302:4304313:1 11/11 None
GENEFINDER00000035374 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4301302:4304313:1 11/11 None
F15E6.2 ENSEMBL cdna:known chromosome:CEL140:IV:4301301:4304376:1 gene:F15E6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4301307-4304319(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15E6.2
Entrez Gene 184533 Entrez gene
SwissProt O44497 EMBL-EBI
WormBase CE36293 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500538 F15E6.2 [Caenorhabditis elegans] gb|AAB92062.2| Hypothetical protein F15E6.2 [Caenorhabditis elegans] 0.0
blast CAE58491 Hypothetical protein CBG01635 [Caenorhabditis briggsae] 0.0
blast AAL77193 Hypothetical protein Y74E4A.1a [Caenorhabditis elegans] ref|NP_740978.1| Y74E4A.1a [Caenorhabditis elegans] 3.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.8E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500538.2 4 293-315,322-339,352-374,422-444
F15E6.2 4 293-315,322-339,352-374,422-444
SNAP00000035369 4 277-299,306-323,336-358,406-428
GENEFINDER00000035374 4 277-299,306-323,336-358,406-428
Sequence
Target Sequence 
>C. ELEGANS:181326_AT
caccactgatccattcgtgtctggatggaagattgaagacgttgaagttgtggaatcccc
atacaccgtggagcagctctcggatcctcgtcgtaatcccttcgatgtccaagctgacaa
cggtgagctctgtatttcgctgagaagaaatgcggtatatttcaccgccgaaatgttgct
cccagctctgatcacctctctattcacgctggccgctgtgttcttccaactttctaagac
ccagccgattcttttgggattctcggtagttgcacagattttgtcacttattttagtgtc
tcagagacttccatcgttcactgcacatactccaactattttgaaatacgccggcttcaa
catgacgtggacagcgatcctcttcgtaatttccctagttctcgagagaatggcaacttc
acaagtagacatcccacccccacatggagtctccacatttgccgggctcgtgaacaagtt
ccttccaattccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCACTGATCCATTCGTGTCTGGA 140 203 684 Antisense
AAGTTGTGGAATCCCCATACACCGT 113 155 728 Antisense
TACACCGTGGAGCAGCTCTCGGATC 581 639 745 Antisense
AATCCCTTCGATGTCCAAGCTGACA 119 167 778 Antisense
GACAACGGTGAGCTCTGTATTTCGC 696 363 799 Antisense
TCTCAGAGACTTCCATCGTTCACTG 22 613 982 Antisense
CACTGCACATACTCCAACTATTTTG 227 199 1002 Antisense
AATACGCCGGCTTCAACATGACGTG 345 173 1028 Antisense
ACATGACGTGGACAGCGATCCTCTT 362 107 1043 Antisense
TCCACATTTGCCGGGCTCGTGAACA 92 589 1135 Antisense
TGAACAAGTTCCTTCCAATTCCGAA 357 573 1154 Antisense
Sequence Source Affymetrix Proprietary Database