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[181324_at]

Description F52H2.4 /REP_DB=WormBase Gene ID /WP=CE10870 /TR=O17394 /GB=AAB71314.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 63      4grp_high_8_8 > 28      6grp_highest_nonorm > 90      6grp_total > 02      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 109.1
(2.8)
P 		96.5
(1.4)
P 		58
(-3)
P 		110.8
(3)
P 		53
B 81.6
(0.2)
P 		111.4
(3)
P 		48.6
(-3)
P 		85.9
(0.6)
P 		63
C 77.5
(-3)
P 		101.5
(-1)
P 		91.4
(-1.9)
P 		151.1
(3)
P 		74
avr 89.4
(-0.2) 		103.1
(1.5) 		66
(-3) 		115.9
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 97.8
(0.4)
P 		117.4
(3)
P 		81.4
(-1.8)
P 		72.6
(-3)
P 		94.3
(-0.1)
P 		84.4
(-1.4)
P 		45
B 108.4
(2.2)
P 		108.5
(2.2)
P 		59.9
(-3)
P 		116.2
(3)
P 		92.8
(0.5)
P 		80.2
(-0.8)
P 		56
C 98.2
(0.7)
P 		115.8
(3)
P 		69.1
(-3)
P 		96.2
(0.5)
P 		115.6
(3)
P 		71
(-2.8)
P 		47
avr 101.5
(1.3) 		113.9
(3) 		70.1
(-3) 		95
(0.4) 		100.9
(1.2) 		78.5
(-1.8) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 39.7
(3)
P 		20.9
(-1.6)
P 		15.2
(-3)
P 		16.2
(-2.8)
P 		25
B 26
(2.4)
P 		27.5
(3)
P 		11.3
(-3)
P 		18.3
(-0.4)
P 		16
C 25.6
(-2.9)
P 		29.2
(0.5)
P 		31.8
(3)
P 		25.5
(-3)
P 		6
avr 30.4
(3) 		25.9
(0.5) 		19.4
(-3) 		20
(-2.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 18
(-2.9)
P 		41.7
(3)
P 		17.7
(-3)
P 		18.4
(-2.8)
P 		28.4
(-0.3)
P 		20.5
(-2.3)
P 		24
B 37.7
(3)
P 		36.1
(2.6)
P 		14.5
(-3)
P 		30.8
(1.2)
P 		37.7
(3)
P 		29.9
(1)
P 		23
C 36.4
(2.7)
P 		35.3
(2.4)
P 		17.6
(-3)
P 		19.3
(-2.5)
P 		37.4
(3)
P 		23.8
(-1.1)
P 		20
avr 30.7
(1) 		37.7
(3) 		16.6
(-3) 		22.8
(-1.2) 		34.5
(2.1) 		24.7
(-0.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181324_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18398
Sequence Type Exemplar sequence
Representative Public ID F52H2.4 NCBI
Target Description F52H2.4 /REP_DB=WormBase Gene ID /WP=CE10870 /TR=O17394 /GB=AAB71314.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076059 NCBI Caenorhabditis elegans F52H2.4 (F52H2.4) mRNA, complete cds. 11/11 None
GENEFINDER00000036214 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2543423:2548960:-1 11/11 None
F52H2.4 ENSEMBL cdna:known chromosome:CEL140:X:2544761:2548022:-1 gene:F52H2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036204 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2544474-2548022(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52H2.4
Entrez Gene 186132 Entrez gene
SwissProt O17394 EMBL-EBI
WormBase CE32190 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71314 Hypothetical protein F52H2.4 [Caenorhabditis elegans] ref|NP_508460.2| F52H2.4 [Caenorhabditis elegans] 0.0
blast CAE58862 Hypothetical protein CBG02091 [Caenorhabditis briggsae] 0.0
blast CAE58862 Hypothetical protein CBG02091 [Caenorhabditis briggsae] 1.0E-169
blast BAD72923.1 unnamed protein product [Drosophila sechellia] dbj|BAD72905.1| unnamed protein product [Drosophila simulans] 5.0E-71
blast BAD72923.1 unnamed protein product [Drosophila sechellia] dbj|BAD72905.1| unnamed protein product [Drosophila simulans] 7.0E-64
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508460.2 11 5-27,47-69,74-96,103-125,148-170,190-212,250-272,299-321,325-347,354-376,416-438
F52H2.4 11 5-27,47-69,74-96,103-125,148-170,190-212,250-272,299-321,325-347,354-376,416-438
GENEFINDER00000036214 13 5-22,43-65,75-97,118-140,150-172,185-204,227-249,269-291,329-351,378-400,404-426,433-455,495-517
Sequence
Target Sequence 
>C. ELEGANS:181324_AT
gtcagcgtcgtttactgcagtgtcttcaatagtgataaacgatgtttggaaagtttatcg
tgagcgtagaaaaatggcgccgcttagaaatgaccaagttcaaaatgcaatgagaatttt
gccaattgttctttcgttcatttcaatatttgtggcgtttctgtgcagcatgctgcagag
cataatattgcaggtttcgttcatagtttttggcgccggtggtggaccggttctcggatc
atttgtggttggattatttgttcctcgcgtgaaagaaaaagctgcactggttggattaat
tgggtcaatcattgtttgtttttccatttcaattggaagcgtgctagtgaaggtcaaacc
tgttgcattggagcttggtcagtgctcaaatcaaactctgacgtattttgatgaatcgtt
tattggagcagtcacgtcgaccccattggttttcgggttggagcgcatttttgccatttc
ttatcagtattacagcatcatagcggttgttacaaacgtggcgctttcaatcgtcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAGCGTCGTTTACTGCAGTGTCT 75 465 792 Antisense
GCCAATTGTTCTTTCGTTCATTTCA 28 279 912 Antisense
ATTTGTGGCGTTTCTGTGCAGCATG 695 17 939 Antisense
TTTCGTTCATAGTTTTTGGCGCCGG 426 671 986 Antisense
GTGGACCGGTTCTCGGATCATTTGT 403 489 1013 Antisense
GGTTGGATTATTTGTTCCTCGCGTG 516 507 1038 Antisense
GGTCAAACCTGTTGCATTGGAGCTT 469 503 1143 Antisense
TTATTGGAGCAGTCACGTCGACCCC 653 677 1211 Antisense
CATTGGTTTTCGGGTTGGAGCGCAT 585 213 1235 Antisense
TGGAGCGCATTTTTGCCATTTCTTA 332 549 1250 Antisense
AAACGTGGCGCTTTCAATCGTCATG 505 127 1305 Antisense
Sequence Source Affymetrix Proprietary Database