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[181323_at]

Description Y40H7A.8 /REP_DB=WormBase Gene ID /WP=CE21819 /TR=Q9XTE9 /GB=CAA22071.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 11      6grp_cgc > 70      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 13.7
(-3)
A 		51
(-0.2)
A 		29.5
(-1.8)
A 		94.8
(3)
A 		81
B 68.9
(2.8)
A 		34
(-1.8)
A 		25.2
(-3)
A 		70.8
(3)
A 		46
C 46.2
(-1.3)
A 		49.6
(-1.2)
A 		5.7
(-3)
A 		149.6
(3)
A 		144
avr 42.9
(-1.4) 		44.9
(-1.2) 		20.1
(-3) 		105.1
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 59.1
(2.7)
A 		32.2
(-0.2)
A 		61.6
(3)
A 		47.8
(1.5)
A 		42.2
(0.9)
A 		6.2
(-3)
A 		55
B 33.1
(1.1)
A 		18.1
(-2.4)
A 		35.2
(1.6)
A 		40.9
(3)
A 		25
(-0.8)
A 		15.7
(-3)
A 		25
C 24.7
(3)
A 		13.4
(0)
A 		5.9
(-1.9)
A 		1.9
(-3)
A 		5
(-2.2)
A 		11
(-0.6)
A 		23
avr 39
(3) 		21.2
(-0.8) 		34.2
(2) 		30.2
(1.1) 		24.1
(-0.2) 		11
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 5
(-3)
A 		11.1
(1.1)
A 		7.7
(-1.2)
A 		13.9
(3)
A 		9
B 22
(3)
A 		8.4
(-2)
A 		5.8
(-3)
A 		15.1
(0.4)
A 		16
C 15.3
(0.4)
A 		14.3
(0.2)
A 		2
(-3)
A 		25.2
(3)
A 		23
avr 14.1
(1.1) 		11.3
(-0.2) 		5.2
(-3) 		18.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.9
(1.7)
A 		11.5
(2)
A 		13.4
(3)
A 		12.1
(2.3)
A 		12.7
(2.6)
A 		1.5
(-3)
A 		12
B 11.5
(3)
A 		6
(-2.8)
A 		8.6
(-0.1)
A 		10.8
(2.3)
A 		10.2
(1.6)
A 		5.8
(-3)
A 		6
C 9.1
(3)
A 		4.1
(-0.4)
A 		1.5
(-2.2)
A 		0.4
(-3)
A 		1.6
(-2.2)
A 		3.7
(-0.7)
A 		9
avr 10.5
(3) 		7.2
(0.1) 		7.8
(0.6) 		7.8
(0.6) 		8.2
(1) 		3.7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181323_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9303
Sequence Type Exemplar sequence
Representative Public ID Y40H7A.8 NCBI
Target Description Y40H7A.8 /REP_DB=WormBase Gene ID /WP=CE21819 /TR=Q9XTE9 /GB=CAA22071.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070426 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-51) (srg-51) mRNA, complete cds. 11/11 None
Y40H7A.8 ENSEMBL cdna:known chromosome:CEL140:IV:15139063:15140894:-1 gene:Y40H7A.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027575 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15139068-15140900(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srg-51
Ensembl Y40H7A.8
Entrez Gene 189807 Entrez gene
SwissProt Q9XTE9 EMBL-EBI
WormBase CE21819 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03214 Hypothetical protein Y40H7A.8 [Caenorhabditis elegans] emb|CAA22071.1| Hypothetical protein Y40H7A.8 [Caenorhabditis elegans] ref|NP_502827.1| Serpentine Receptor, class G (gamma) family member (srg-51) [Caenorhabditis elegans] 1.0E-148
blast AAF60571 Serpentine receptor, class g (gamma) protein 50 [Caenorhabditis elegans] ref|NP_501100.2| Serpentine Receptor, class G (gamma) family member (srg-50) [Caenorhabditis elegans] 1.0E-54
blast AAB69903 Serpentine receptor, class g (gamma) protein 53 [Caenorhabditis elegans] ref|NP_503348.1| Serpentine Receptor, class G (gamma) family member (srg-53) [Caenorhabditis elegans] sp|O16974|SRG53_CAEEL Serpentine receptor class gamma-53 (Protein srg-53) 3.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502827.1 6 7-29,33-55,118-140,168-190,211-230,240-262
Y40H7A.8 6 7-29,33-55,118-140,168-190,211-230,240-262
Sequence
Target Sequence 
>C. ELEGANS:181323_AT
tttcttcaatcgttcttttttcatgttcagagtttgagtacaattgtaatttgtactcat
agattgagtgctgcaaaattggaaaatgcaaataaaatctggaatcgatattatattttg
gtgtatttgggaattttagtgtattcttatttggttacaaagttgattcggtttcagaaa
attcattttgactatggaatacaaagatttctgattgaggatctgccagaggaagataaa
atgttcaatggctcgtacttatttctatttttcaccagttatgcccttatcataatgata
atgggtggattgactcttcaacaagtccgtgaacgtcttgccgaccatgctgatcattat
agacagcttcttcaaagactctcaaaagttgcaatatgccatacaatagtattctcattg
tacttatgttggcaagttaccaattcattcttgtcatattacacatcgattccagtactg
atggttgtgactgatgtagttacattctcaatgccttacatactactagtgtttgattta
aacgttcgagtggcgctcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTTCAATCGTTCTTTTTTCATG 33 673 265 Antisense
ATGGCTCGTACTTATTTCTATTTTT 475 51 512 Antisense
ATTTTTCACCAGTTATGCCCTTATC 183 15 531 Antisense
GGATTGACTCTTCAACAAGTCCGTG 50 507 571 Antisense
ACAAGTCCGTGAACGTCTTGCCGAC 706 113 585 Antisense
CTTGCCGACCATGCTGATCATTATA 455 219 601 Antisense
TAGACAGCTTCTTCAAAGACTCTCA 58 651 624 Antisense
GTTACCAATTCATTCTTGTCATATT 259 447 700 Antisense
GATTCCAGTACTGATGGTTGTGACT 297 433 732 Antisense
ACATTCTCAATGCCTTACATACTAC 408 105 766 Antisense
TTAAACGTTCGAGTGGCGCTCAAAA 135 681 802 Antisense
Sequence Source Affymetrix Proprietary Database