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[181322_at]

Description F07C4.2 /REP_DB=WormBase Gene ID /WP=CE09201 /TR=P91214 /GB=AAG24036.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 51      6grp_cgc > 08      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 50.3
(0.5)
A 		81
(3)
A 		60.9
(1.4)
A 		6.1
(-3)
A 		75
B 52.2
(0.9)
A 		78.3
(3)
A 		38.6
(-0.1)
A 		2.2
(-3)
A 		76
C 53.2
(-3)
A 		97.3
(3)
A 		61.4
(-1.9)
A 		69.7
(-0.8)
A 		44
avr 51.9
(-0.4) 		85.5
(3) 		53.6
(-0.2) 		26
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 1.9
(-3)
A 		2.2
(-2.9)
A 		3
(-2.5)
A 		1.9
(-3)
A 		5.6
(-1.3)
A 		14.9
(3)
A 		13
B 17.3
(3)
A 		13.8
(1.6)
A 		3.9
(-2.5)
A 		2.7
(-3)
A 		8.9
(-0.5)
A 		16.4
(2.6)
A 		15
C 31
(3)
A 		3.8
(-2.7)
A 		3.3
(-2.8)
A 		3.1
(-2.8)
A 		19.1
(0.5)
A 		2.3
(-3)
A 		29
avr 16.7
(3) 		6.6
(-1.3) 		3.4
(-2.7) 		2.6
(-3) 		11.2
(0.7) 		11.2
(0.7) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 18.3
(3)
A 		17.6
(2.8)
A 		15.9
(2.2)
A 		0.9
(-3)
A 		17
B 16.7
(2.2)
A 		19.3
(3)
A 		8.9
(-0.3)
A 		0.5
(-3)
A 		19
C 17.6
(-0.9)
A 		28
(3)
A 		21.4
(0.6)
A 		11.8
(-3)
A 		16
avr 17.5
(1.6) 		21.6
(3) 		15.4
(0.8) 		4.4
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.8
(-2.3)
A 		0.7
(-2.4)
A 		0.5
(-2.8)
A 		1.7
(-0.6)
A 		3.6
(3)
A 		3
B 6
(2.9)
A 		4.6
(1.3)
A 		0.9
(-2.8)
A 		0.7
(-3)
A 		3.6
(0.2)
A 		6.1
(3)
A 		5
C 11.5
(3)
A 		1.2
(-2.7)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		6.2
(0.1)
A 		0.8
(-2.9)
A 		11
avr 6
(3) 		2.2
(-1.2) 		0.8
(-2.8) 		0.6
(-3) 		3.8
(0.6) 		3.5
(0.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181322_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11596
Sequence Type Exemplar sequence
Representative Public ID F07C4.2 NCBI
Target Description F07C4.2 /REP_DB=WormBase Gene ID /WP=CE09201 /TR=P91214 /GB=AAG24036.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072576(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072576 NCBI Caenorhabditis elegans C-type LECtin family member (clec-45) (clec-45) mRNA, complete cds. 11/11 A 
SNAP00000003394 ENSEMBL cdna:SNAP chromosome:CEL140:V:7640697:7641214:1 11/11 None
GENEFINDER00000003406 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7640697:7641214:1 11/11 None
F07C4.2 ENSEMBL cdna:known chromosome:CEL140:V:7640697:7641214:1 gene:F07C4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7640697-7641215(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-45
Ensembl F07C4.2
Entrez Gene 184130 Entrez gene
SwissProt P91214 EMBL-EBI
WormBase CE09201 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504977 C-type LECtin family member (clec-45) [Caenorhabditis elegans] gb|AAG24036.1| C-type lectin protein 45 [Caenorhabditis elegans] 6.0E-77
blast NP_504976 C-type LECtin family member (clec-46) [Caenorhabditis elegans] gb|AAG24034.1| C-type lectin protein 46 [Caenorhabditis elegans] 3.0E-53
blast CAB05809 Hypothetical protein T09F5.9 [Caenorhabditis elegans] ref|NP_506744.1| C-type LECtin family member (clec-47) [Caenorhabditis elegans] 7.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504977.1 1 5-27
F07C4.2 1 5-27
SNAP00000003394 1 5-27
GENEFINDER00000003406 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:181322_AT
acgcgtctcgtaacaactggtcaatgtctgaaaatgattgttgctccgttgagctactcg
gatgcctcggcaaaatgcaaatcccttggtgccaaggtgctcactattcaaaacgctatt
cagaataatgccgtcttgagcttcgccactgcttcggcaactggaaatgacaaagattat
tggcttgggctccaatgcaccacagcttcctctagttcttgcaattgggctgacgggagc
aagttctcgtttgatggttttgctgagggtcagccaaacaatagcttgggaacttgtgta
tttgttggaaatcgcggccagactgccggtcagtggttcagtgcagagtgtggtttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCGTCTCGTAACAACTGGTCAAT 488 87 91 Antisense
CACTGCTTCGGCAACTGGAAATGAC 66 199 237 Antisense
GACAAAGATTATTGGCTTGGGCTCC 157 365 259 Antisense
AGCTTCCTCTAGTTCTTGCAATTGG 685 77 294 Antisense
GTTCTTGCAATTGGGCTGACGGGAG 151 443 305 Antisense
GCTGACGGGAGCAAGTTCTCGTTTG 120 297 319 Antisense
TCGTTTGATGGTTTTGCTGAGGGTC 355 601 337 Antisense
GCTGAGGGTCAGCCAAACAATAGCT 202 297 352 Antisense
TTGGAAATCGCGGCCAGACTGCCGG 283 707 395 Antisense
GACTGCCGGTCAGTGGTTCAGTGCA 331 375 411 Antisense
GGTTCAGTGCAGAGTGTGGTTTGGT 123 507 425 Antisense
Sequence Source Affymetrix Proprietary Database