[Home] | [Total List]

[181321_at]

Description T22D1.8 /REP_DB=WormBase Gene ID /WP=CE17252 /TR=Q9GZH7 /GB=AAF98629.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 19      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 13.4
(-3)
A 		38
(-0.1)
P 		19.5
(-2.3)
A 		64
(3)
P 		51
B 26.1
(2)
A 		11.8
(-2.2)
A 		8.9
(-3)
A 		29.5
(3)
A 		21
C 20.6
(-2.6)
A 		32.1
(-1.5)
P 		16.4
(-3)
A 		78.4
(3)
A 		62
avr 20
(-2.3) 		27.3
(-1.2) 		14.9
(-3) 		57.3
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 36
(-1.7)
A 		25.8
(-2.9)
A 		34.2
(-1.9)
A 		24.5
(-3)
A 		76.5
(3)
P 		57.8
(0.8)
P 		52
B 19.2
(-2.7)
A 		42.3
(2.7)
P 		17.7
(-3)
A 		30.8
(0)
P 		29.7
(-0.2)
P 		43.7
(3)
P 		26
C 24.4
(-0.9)
A 		28.8
(-0.5)
A 		2
(-3)
A 		65.1
(3)
A 		20.4
(-1.3)
P 		46.1
(1.2)
P 		63
avr 26.5
(-1.4) 		32.3
(-0.3) 		18
(-3) 		40.1
(1.3) 		42.2
(1.7) 		49.2
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.9
(-3)
A 		8.2
(1.4)
P 		5.1
(-2.7)
A 		9.4
(3)
P 		5
B 8.3
(3)
A 		2.9
(-2.2)
A 		2.1
(-3)
A 		6.3
(1.1)
A 		6
C 6.8
(-2.1)
A 		9.2
(-0.2)
P 		5.7
(-3)
A 		13.2
(3)
A 		8
avr 6.7
(-0.3) 		6.8
(-0.2) 		4.3
(-3) 		9.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 6.6
(-2.9)
A 		9.2
(-1.9)
A 		7.4
(-2.6)
A 		6.2
(-3)
A 		23.1
(3)
P 		14.1
(-0.2)
P 		17
B 6.7
(-1.8)
A 		14.1
(1.9)
P 		4.3
(-3)
A 		8.2
(-1.1)
P 		12
(0.9)
P 		16.3
(3)
P 		12
C 9.1
(0.5)
A 		8.8
(0.3)
A 		0.5
(-3)
A 		13.1
(2.1)
A 		6.6
(-0.5)
P 		15.4
(3)
P 		15
avr 7.5
(-1.2) 		10.7
(0.5) 		4.1
(-3) 		9.2
(-0.3) 		13.9
(2.3) 		15.3
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181321_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9341
Sequence Type Exemplar sequence
Representative Public ID T22D1.8 NCBI
Target Description T22D1.8 /REP_DB=WormBase Gene ID /WP=CE17252 /TR=Q9GZH7 /GB=AAF98629.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068661 NCBI Caenorhabditis elegans T22D1.8 (T22D1.8) mRNA, complete cds. 11/11 None
GENEFINDER00000024024 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6898468:6903608:-1 11/11 None
T22D1.8 ENSEMBL cdna:known chromosome:CEL140:IV:6900310:6903608:-1 gene:T22D1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024005 8/11 Cross Hyb Matching Probes None
SNAP00000024006 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6900315-6903614(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22D1.8
Entrez Gene 188741 Entrez gene
SwissProt Q9GZH7 EMBL-EBI
WormBase CE17252 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98629 Hypothetical protein T22D1.8 [Caenorhabditis elegans] ref|NP_501062.1| T22D1.8 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501062.1 2 9-26,363-382
T22D1.8 2 9-26,363-382
GENEFINDER00000024024 2 9-26,363-382
Sequence
Target Sequence 
>C. ELEGANS:181321_AT
aaacatctagtaaagccgcacaggcttgacatagatcaatcaggagatcccacaatagac
ttgaaattagaattcaccaacgatcaactgttgagcatcagttctccccaaagacttgga
ataaataaaacatttgaagctccaattggaaaaccgacaggaagggtgtacttcagaaaa
ttttatgaaagtcaactattagatgcttatttcacaagaggaaactgttcgaaaactgat
ttttacttcttccctgagaatcgaaccgatggatttgtgaattgtctttacacgcgatcg
cgatctttgtcaattccagtgtatagttgccggagtgctagatatgcggcttgtatggat
attcgtgatccaagtgtttctacaactacagtacccccaccagtcagttcaacgagtatt
ccggttactataacttcaactgtaaccactacgacaactacagaacaggaatctccgtat
tacttttatgcagaattaatagatgaagaagaattcctttttatatcaattggtgctctt
tccattatttttacagtcggtgctataggattccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACATCTAGTAAAGCCGCACAGGC 102 119 586 Antisense
CATCAGTTCTCCCCAAAGACTTGGA 86 201 681 Antisense
GATTTTTACTTCTTCCCTGAGAATC 467 429 823 Antisense
TGAATTGTCTTTACACGCGATCGCG 561 575 863 Antisense
GATCGCGATCTTTGTCAATTCCAGT 232 417 881 Antisense
GGAGTGCTAGATATGCGGCTTGTAT 232 517 917 Antisense
TTCGTGATCCAAGTGTTTCTACAAC 670 695 947 Antisense
AACTTCAACTGTAACCACTACGACA 369 139 1017 Antisense
GGAATCTCCGTATTACTTTTATGCA 250 533 1053 Antisense
ATCAATTGGTGCTCTTTCCATTATT 280 25 1110 Antisense
CAGTCGGTGCTATAGGATTCCAAAT 599 207 1139 Antisense
Sequence Source Affymetrix Proprietary Database