[Home] | [Total List]

[181320_at]

Description T08A9.5 /REP_DB=WormBase Gene ID /WP=CE04920 /TR=Q22334 /GB=AAA81412.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 15.9
(-2.6)
A 		59.4
(1.7)
A 		12.1
(-3)
A 		72.4
(3)
A 		60
B 34.1
(1.1)
A 		41.8
(2.4)
A 		10.8
(-3)
A 		45
(3)
A 		34
C 22.2
(-1.4)
A 		64.6
(3)
A 		6.8
(-3)
A 		52.9
(1.8)
A 		58
avr 24.1
(-1.2) 		55.3
(2.8) 		9.9
(-3) 		56.8
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 25.8
(3)
A 		2.6
(-3)
A 		22.8
(2.2)
A 		3.1
(-2.9)
A 		10.1
(-1.1)
A 		6.8
(-1.9)
A 		23
B 10.6
(-2)
A 		38.8
(3)
A 		4.8
(-3)
A 		7
(-2.6)
A 		31.1
(1.6)
A 		25.3
(0.6)
A 		34
C 49.4
(3)
A 		17
(-1.5)
A 		6.3
(-3)
A 		43.4
(2.2)
A 		28.9
(0.1)
A 		13.9
(-1.9)
A 		43
avr 28.6
(3) 		19.5
(-0.2) 		11.3
(-3) 		17.8
(-0.7) 		23.4
(1.2) 		15.3
(-1.6) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.8
(-1.4)
A 		12.9
(3)
A 		3.2
(-3)
A 		10.6
(1.6)
A 		10
B 10.9
(3)
A 		10.3
(2.6)
A 		2.5
(-3)
A 		9.6
(2.1)
A 		8
C 7.3
(-1.2)
A 		18.6
(3)
A 		2.4
(-3)
A 		8.9
(-0.6)
A 		16
avr 8
(-0.2) 		13.9
(3) 		2.7
(-3) 		9.7
(0.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4.8
(2.7)
A 		0.9
(-2.9)
A 		5
(3)
A 		0.8
(-3)
A 		3
(0.1)
A 		1.6
(-1.9)
A 		4
B 3.7
(-1.7)
A 		12.9
(3)
A 		1.2
(-3)
A 		1.8
(-2.7)
A 		12.6
(2.8)
A 		9.4
(1.2)
A 		12
C 18.3
(3)
A 		5.2
(-1.7)
A 		1.6
(-3)
A 		8.7
(-0.4)
A 		9.4
(-0.2)
A 		4.7
(-1.9)
A 		17
avr 8.9
(3) 		6.3
(0.5) 		2.6
(-3) 		3.8
(-1.9) 		8.3
(2.4) 		5.2
(-0.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181320_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16125
Sequence Type Exemplar sequence
Representative Public ID T08A9.5 NCBI
Target Description T08A9.5 /REP_DB=WormBase Gene ID /WP=CE04920 /TR=Q22334 /GB=AAA81412.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076832(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076832 NCBI Caenorhabditis elegans T08A9.5 (T08A9.5) mRNA, complete cds. 11/11 None
SNAP00000001749 ENSEMBL cdna:SNAP chromosome:CEL140:X:7312120:7313310:1 11/11 None
GENEFINDER00000001764 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7312120:7313310:1 11/11 None
T08A9.5 ENSEMBL cdna:known chromosome:CEL140:X:7312559:7313310:1 gene:T08A9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7312557-7313309(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08A9.5
Entrez Gene 188264 Entrez gene
SwissProt Q22334 EMBL-EBI
WormBase CE04920 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07666 Hypothetical protein T10C6.10 [Caenorhabditis elegans] ref|NP_507030.1| T10C6.10 [Caenorhabditis elegans] 1.0E-83
blast NP_509233 T08A9.5 [Caenorhabditis elegans] gb|AAA81412.1| Hypothetical protein T08A9.5 [Caenorhabditis elegans] 2.0E-76
blast NP_509233 T08A9.5 [Caenorhabditis elegans] gb|AAA81412.1| Hypothetical protein T08A9.5 [Caenorhabditis elegans] 6.0E-76
blast NP_509232 T08A9.6 [Caenorhabditis elegans] gb|AAA81411.1| Hypothetical protein T08A9.6 [Caenorhabditis elegans] 2.0E-48
blast CAB07666 Hypothetical protein T10C6.10 [Caenorhabditis elegans] ref|NP_507030.1| T10C6.10 [Caenorhabditis elegans] 3.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.3E-4
Sequence
Target Sequence 
>C. ELEGANS:181320_AT
ggacacatgtgtctacaaccttgcctcggttttgtaccacaattttaaattgccatggtg
gagtcgccgtggccattatggatgaatgtactatgagagtgagacaacacactgatcatc
caattttcaacaagaacctcgtggcgatattgtcggaaaatataaactcgaacgaacacg
tcagcctgcagtcatcaattttcctggaatacgtgcttttggaggaaatcatcgttgagt
ttcgtttctccatacctctcttcaatcggacacagatcttcaccctgaatcgtgtgtgca
tcatggatgatagatgggtcaactttggatatgttatggaatcgactttcactcggctta
tattgtcaaacaccaaatgggatggggatgccttctcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACACATGTGTCTACAACCTTGCC 649 525 44 Antisense
CTTGCCTCGGTTTTGTACCACAATT 306 219 63 Antisense
AAATTGCCATGGTGGAGTCGCCGTG 611 113 90 Antisense
GAGTCGCCGTGGCCATTATGGATGA 31 401 104 Antisense
AACACACTGATCATCCAATTTTCAA 482 135 149 Antisense
CAAGAACCTCGTGGCGATATTGTCG 627 185 174 Antisense
ATTTTCCTGGAATACGTGCTTTTGG 69 13 241 Antisense
ACCTCTCTTCAATCGGACACAGATC 516 87 297 Antisense
ACACAGATCTTCACCCTGAATCGTG 548 111 313 Antisense
TGGAATCGACTTTCACTCGGCTTAT 582 545 380 Antisense
ATGGGATGGGGATGCCTTCTCAAAA 41 49 420 Antisense
Sequence Source Affymetrix Proprietary Database