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[181319_at] 7TM chemoreceptor, srd family

Description T19E7.5 /REP_DB=WormBase Gene ID /WP=CE04988 /TR=Q22594 /GB=AAA83598.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 23      6grp_cgc > 70      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 31.3
(3)
A 		5.8
(-3)
A 		17
(-0.4)
A 		25.2
(1.6)
A 		26
B 50.4
(3)
A 		4.1
(-2.9)
A 		3.3
(-3)
A 		5
(-2.8)
A 		47
C 29.2
(-1.3)
A 		24.3
(-1.9)
A 		14.4
(-3)
A 		66.3
(3)
P 		52
avr 37
(3) 		11.4
(-3) 		11.6
(-3) 		32.2
(1.9) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 36.6
(2.9)
A 		22.3
(0.5)
A 		36.9
(3)
A 		6.5
(-2.1)
A 		19.7
(0.1)
A 		1.2
(-3)
A 		36
B 27.4
(3)
A 		14.6
(-0.1)
A 		22.2
(1.7)
A 		16
(0.2)
A 		24.9
(2.4)
A 		2.9
(-3)
A 		25
C 7.6
(-3)
A 		32.5
(2)
A 		30.9
(1.7)
A 		37.6
(3)
A 		13.5
(-1.8)
A 		12.4
(-2)
A 		30
avr 23.9
(1.5) 		23.1
(1.3) 		30
(3) 		20
(0.6) 		19.4
(0.4) 		5.5
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.4
(3)
A 		1.3
(-3)
A 		4.4
(-1.2)
A 		3.7
(-1.6)
A 		10
B 16.1
(3)
A 		1
(-2.9)
A 		0.8
(-3)
A 		1.1
(-2.9)
A 		15
C 9.7
(1.5)
A 		7
(-1.1)
A 		5
(-3)
A 		11.2
(3)
P 		6
avr 12.4
(3) 		3.1
(-3) 		3.4
(-2.8) 		5.3
(-1.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 6.7
(2)
A 		7.9
(2.9)
A 		8
(3)
A 		1.6
(-2)
A 		5.9
(1.4)
A 		0.3
(-3)
A 		8
B 9.5
(2.6)
A 		4.8
(-0.5)
A 		5.4
(-0.1)
A 		4.2
(-0.9)
A 		10.1
(3)
A 		1.1
(-3)
A 		9
C 2.8
(-3)
A 		9.9
(3)
A 		7.9
(1.3)
A 		7.6
(1.1)
A 		4.4
(-1.6)
A 		4.1
(-1.9)
A 		7
avr 6.3
(1.7) 		7.5
(3) 		7.1
(2.6) 		4.5
(-0.2) 		6.8
(2.3) 		1.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181319_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10518
Sequence Type Exemplar sequence
Representative Public ID T19E7.5 NCBI
Target Description T19E7.5 /REP_DB=WormBase Gene ID /WP=CE04988 /TR=Q22594 /GB=AAA83598.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068444(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068444 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-5) (srd-5) mRNA, complete cds. 11/11 None
SNAP00000009631 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5672618:5673311:-1 10/11 None
GENEFINDER00000009632 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5672618:5673387:-1 11/11 None
T19E7.5 ENSEMBL cdna:known chromosome:CEL140:IV:5672618:5674512:-1 gene:T19E7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5672623-5674518(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-5
Ensembl T19E7.5
Entrez Gene 188612 Entrez gene
SwissProt Q22594 EMBL-EBI
WormBase CE33697 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83598 Serpentine receptor, class d (delta) protein 5 [Caenorhabditis elegans] ref|NP_500845.2| Serpentine Receptor, class D (delta) family member (srd-5) [Caenorhabditis elegans] 0.0
blast AAA83598 Serpentine receptor, class d (delta) protein 5 [Caenorhabditis elegans] ref|NP_500845.2| Serpentine Receptor, class D (delta) family member (srd-5) [Caenorhabditis elegans] 1.0E-133
blast AAA83598 Serpentine receptor, class d (delta) protein 5 [Caenorhabditis elegans] ref|NP_500845.2| Serpentine Receptor, class D (delta) family member (srd-5) [Caenorhabditis elegans] 1.0E-106
blast CAE72668 Hypothetical protein CBG19884 [Caenorhabditis briggsae] 1.0E-93
blast CAE72686 Hypothetical protein CBG19906 [Caenorhabditis briggsae] 2.0E-70
blast CAE72674 Hypothetical protein CBG19891 [Caenorhabditis briggsae] 4.0E-56
blast CAE72685 Hypothetical protein CBG19904 [Caenorhabditis briggsae] 7.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500845.2 7 5-27,40-62,92-114,127-145,182-204,229-251,266-288
T19E7.5 7 5-27,40-62,92-114,127-145,182-204,229-251,266-288
SNAP00000009631 4 13-31,67-89,102-124,139-161
GENEFINDER00000009632 5 4-26,39-57,94-116,141-163,178-200
Sequence
Target Sequence 
>C. ELEGANS:181319_AT
agtagaactacttttgctcattatttatctaccttcatttattcaaatgattctcttatt
ttttgattttaccgatcctttgattcttttggatattcaacagaatctagttcctcaata
caatttcacagatcttatgatatttggagttgccgatagtacttccttcaatgcaatgta
ttcaatcgtccacgtggctgttatgagtactccaattgtgttgtgcattgtggttttgag
gaagaaaatattgagaaagatggaatttaaaggagttcaagtaaatgcaaatacgagaag
cttacagttacagcttcttcgagctttaactttccaagcagtaattccgggcttctactt
gattggagttgccagctattttgtcagtcgactcgaaatctaccgtgatccattttttga
atatttaattttctccgcgttcttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTAGAACTACTTTTGCTCATTATT 248 63 303 Antisense
GCTCATTATTTATCTACCTTCATTT 417 301 318 Antisense
GATTTTACCGATCCTTTGATTCTTT 54 429 367 Antisense
GCCGATAGTACTTCCTTCAATGCAA 584 283 454 Antisense
GCAATGTATTCAATCGTCCACGTGG 434 321 475 Antisense
GTCCACGTGGCTGTTATGAGTACTC 411 475 490 Antisense
GCTTCTTCGAGCTTTAACTTTCCAA 264 305 615 Antisense
CAAGCAGTAATTCCGGGCTTCTACT 609 185 637 Antisense
GTTGCCAGCTATTTTGTCAGTCGAC 652 439 670 Antisense
TCAGTCGACTCGAAATCTACCGTGA 350 623 686 Antisense
TATTTAATTTTCTCCGCGTTCTTAT 142 663 724 Antisense
Sequence Source Affymetrix Proprietary Database