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[181318_at]

Description W04C9.2 /REP_DB=WormBase Gene ID /WP=CE18333 /TR=Q9TZE0 /GB=AAC68725.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 55      6grp_total > 60      4grp_total > 60      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1171
1 2 3 4 range
A 1820.3
(2.5)
P 		1503.6
(0.5)
P 		1907.8
(3)
P 		944.6
(-3)
P 		963
B 1741.4
(2.8)
P 		1780.1
(3)
P 		1633.1
(2.1)
P 		798.4
(-3)
P 		982
C 1501.7
(0.3)
P 		1723.3
(1.6)
P 		1969.6
(3)
P 		942.6
(-3)
P 		1027
avr 1687.8
(2.1) 		1669
(1.9) 		1836.8
(3) 		895.2
(-3) 		942

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1064
1 2 3 4 5 6 range
A 1389.8
(-3)
P 		1839
(0.5)
P 		2134.9
(2.8)
P 		2157.7
(3)
P 		1454.5
(-2.5)
P 		1511.2
(-2.1)
P 		768
B 2272.6
(3)
P 		1605.9
(-2.3)
P 		1812.8
(-0.6)
P 		1839.8
(-0.4)
P 		1727.9
(-1.3)
P 		1511.8
(-3)
P 		761
C 1655.4
(-2)
P 		1703
(-1.7)
P 		1916.3
(-0.4)
P 		2453.8
(3)
P 		1622.1
(-2.2)
P 		1499.3
(-3)
P 		955
avr 1772.6
(-0.5) 		1716
(-1.1) 		1954.7
(1.2) 		2150.4
(3) 		1601.5
(-2.1) 		1507.4
(-3) 		643
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 548
1 2 3 4 range
A 662.8
(3)
P 		326.4
(-0.8)
P 		498.7
(1.1)
P 		138.3
(-3)
P 		525
B 555.3
(3)
P 		439.6
(1.2)
P 		378.4
(0.2)
P 		170.1
(-3)
P 		385
C 497.1
(0.8)
P 		495.5
(0.8)
P 		686.5
(3)
P 		158.9
(-3)
P 		528
avr 571.7
(3) 		420.5
(0.8) 		521.2
(2.3) 		155.8
(-3) 		416

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 535
1 2 3 4 5 6 range
A 256.2
(-3)
P 		654
(3)
P 		464.9
(0.1)
P 		547.2
(1.4)
P 		438.9
(-0.2)
P 		367.9
(-1.3)
P 		398
B 790.8
(3)
P 		534.5
(-1.4)
P 		440.2
(-3)
P 		487.3
(-2.2)
P 		702
(1.5)
P 		563.8
(-0.9)
P 		351
C 613.6
(3)
P 		519.6
(-1.5)
P 		487.7
(-3)
P 		493.5
(-2.7)
P 		524.9
(-1.2)
P 		501.9
(-2.3)
P 		126
avr 553.5
(2.1) 		569.4
(3) 		464.3
(-3) 		509.3
(-0.4) 		555.3
(2.2) 		477.9
(-2.2) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181318_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2554
Sequence Type Exemplar sequence
Representative Public ID W04C9.2 NCBI
Target Description W04C9.2 /REP_DB=WormBase Gene ID /WP=CE18333 /TR=Q9TZE0 /GB=AAC68725.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058337(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058337 NCBI Caenorhabditis elegans W04C9.2 (W04C9.2) mRNA, complete cds. 11/11 None
SNAP00000019989 ENSEMBL cdna:SNAP chromosome:CEL140:I:488619:489774:1 11/11 None
GENEFINDER00000019993 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:488619:489774:1 11/11 None
W04C9.2 ENSEMBL cdna:known chromosome:CEL140:I:488619:489908:1 gene:W04C9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:488618-489774(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04C9.2
Entrez Gene 171638 Entrez gene
SwissProt Q9TZE0 EMBL-EBI
WormBase CE18333 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68725 Hypothetical protein W04C9.2 [Caenorhabditis elegans] ref|NP_490738.1| W04C9.2 [Caenorhabditis elegans] 2.0E-52
blast CAE74831 Hypothetical protein CBG22669 [Caenorhabditis briggsae] 6.0E-50
Sequence
Target Sequence 
>C. ELEGANS:181318_AT
gtggaaaactgcaaaactcggaattaaagttggactcgtcgccggcgccgtcaaactgtc
aatcgataacgatatttggtcgactaacaatgttaaaggcagcgaactgtatcaaaagct
taaaaagtacattcttcccggcaccgtcgtctttccagagcagctcccaacagtcgaaga
tgtgcagctgaaggccggtggaaagtggaacagtgctgttgactcggtattcaccacaat
cgagaacgtcccatcaagcgtgaacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAAAACTGCAAAACTCGGAATT 344 491 24 Antisense
GGAATTAAAGTTGGACTCGTCGCCG 374 533 43 Antisense
GGCAGCGAACTGTATCAAAAGCTTA 540 535 121 Antisense
TCTTTCCAGAGCAGCTCCCAACAGT 400 615 173 Antisense
GCAGCTCCCAACAGTCGAAGATGTG 521 311 183 Antisense
GATGTGCAGCTGAAGGCCGGTGGAA 248 409 202 Antisense
GGCCGGTGGAAAGTGGAACAGTGCT 513 541 216 Antisense
GAACAGTGCTGTTGACTCGGTATTC 618 351 231 Antisense
GTTGACTCGGTATTCACCACAATCG 318 439 241 Antisense
TCACCACAATCGAGAACGTCCCATC 30 625 254 Antisense
GAACGTCCCATCAAGCGTGAACACA 597 347 267 Antisense
Sequence Source Affymetrix Proprietary Database