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[181317_at]

Description C17F4.2 /REP_DB=WormBase Gene ID /WP=CE08275 /TR=O16542 /GB=AAK31435.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 5.7
(-3)
A 		207.9
(3)
A 		141.2
(1)
A 		7.2
(-3)
A 		202
B 2.7
(-3)
A 		129.6
(1.7)
A 		164.4
(3)
M 		7.3
(-2.8)
A 		162
C 4.9
(-3)
A 		122.3
(1.1)
A 		177.8
(3)
P 		4.6
(-3)
A 		173
avr 4.4
(-3) 		153.3
(2.7) 		161.1
(3) 		6.4
(-2.9) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 7.2
(-3)
A 		150.9
(-0.7)
P 		134.8
(-1)
A 		383
(3)
P 		239.9
(0.7)
P 		52
(-2.3)
A 		376
B 48
(-3)
A 		152.3
(0.1)
P 		181.9
(1)
A 		248.7
(3)
P 		250.2
(3)
P 		62.4
(-2.6)
A 		202
C 30.4
(-3)
A 		167.3
(-0.2)
M 		125.4
(-1.1)
A 		323.2
(3)
P 		243.8
(1.4)
P 		54.6
(-2.5)
A 		293
avr 28.5
(-3) 		156.8
(-0.3) 		147.4
(-0.5) 		318.3
(3) 		244.6
(1.5) 		56.3
(-2.4) 		290
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 2.1
(-2.9)
A 		45.1
(3)
A 		36.9
(1.9)
A 		1.1
(-3)
A 		44
B 0.9
(-3)
A 		32
(2)
A 		38.1
(3)
M 		1.6
(-2.9)
A 		37
C 1.6
(-2.9)
A 		35.2
(0.4)
A 		62
(3)
P 		0.8
(-3)
A 		61
avr 1.5
(-3) 		37.4
(1.9) 		45.7
(3) 		1.2
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 1.3
(-3)
A 		53.7
(0.3)
P 		29.4
(-1.2)
A 		97.1
(3)
P 		72.4
(1.5)
P 		12.7
(-2.3)
A 		96
B 16.7
(-3)
A 		50.7
(-0.6)
P 		44.2
(-1.1)
A 		65.9
(0.5)
P 		101.7
(3)
P 		23.3
(-2.5)
A 		85
C 11.3
(-3)
A 		51.1
(0.5)
M 		31.9
(-1.2)
A 		65
(1.8)
P 		78.9
(3)
P 		18.3
(-2.4)
A 		68
avr 9.8
(-3) 		51.8
(0.4) 		35.2
(-1) 		76
(2.3) 		84.3
(3) 		18.1
(-2.3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181317_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5683
Sequence Type Exemplar sequence
Representative Public ID C17F4.2 NCBI
Target Description C17F4.2 /REP_DB=WormBase Gene ID /WP=CE08275 /TR=O16542 /GB=AAK31435.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062088(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062088 NCBI Caenorhabditis elegans C17F4.2 (C17F4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000021575 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3248687:3249324:1 11/11 None
C17F4.2 ENSEMBL cdna:known chromosome:CEL140:II:3248687:3249383:1 gene:C17F4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021558 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3248685-3249323(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17F4.2
Entrez Gene 173670 Entrez gene
SwissProt O16542 EMBL-EBI
WormBase CE08275 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31435 Hypothetical protein C17F4.2 [Caenorhabditis elegans] ref|NP_494489.1| C17F4.2 [Caenorhabditis elegans] 5.0E-62
blast CAE73884 Hypothetical protein CBG21481 [Caenorhabditis briggsae] 3.0E-50
Sequence
Target Sequence 
>C. ELEGANS:181317_AT
atttttcttgtatttctgctgcaatttagcccatgggctcacccgacaggatttgttgga
ccatttaaaatatgcacaagaaacccgtaacacttttgactcgagaattcgacaaggaga
ctatatgaaacctatcggttatgttggcggaaaaccaatctggccgagggtcctggaaag
ggtccggtctaccggtgagctgttttttgacgacgataatgtggcatacgtggttcacga
ccgcaatccggcaggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTTCTTGTATTTCTGCTGCAAT 541 15 27 Antisense
CTGCTGCAATTTAGCCCATGGGCTC 337 237 42 Antisense
GGCTCACCCGACAGGATTTGTTGGA 113 537 62 Antisense
ATATGCACAAGAAACCCGTAACACT 242 21 96 Antisense
CCCGTAACACTTTTGACTCGAGAAT 298 255 110 Antisense
GAAACCTATCGGTTATGTTGGCGGA 401 359 153 Antisense
GAAAACCAATCTGGCCGAGGGTCCT 193 351 176 Antisense
GGTCCGGTCTACCGGTGAGCTGTTT 407 491 207 Antisense
GGTGAGCTGTTTTTTGACGACGATA 412 501 220 Antisense
GTGGCATACGTGGTTCACGACCGCA 26 493 247 Antisense
TTCACGACCGCAATCCGGCAGGAAT 692 685 260 Antisense
Sequence Source Affymetrix Proprietary Database